All Outputs (37)

Classification of osteoarthritic and healthy cartilage using deep learning with Raman spectra (2024)
Journal Article

Raman spectroscopy is a rapid method for analysing the molecular composition of biological material. However, noise contamination in the spectral data necessitates careful pre-processing prior to analysis. Here we propose an end-to-end Convolutional... Read More about Classification of osteoarthritic and healthy cartilage using deep learning with Raman spectra.

Addressing multiple salient object detection via dual-space long-range dependencies (2023)
Journal Article

Salient object detection plays an important role in many downstream tasks. However, complex real-world scenes with varying scales and numbers of salient objects still pose a challenge. In this paper, we directly address the problem of detecting multi... Read More about Addressing multiple salient object detection via dual-space long-range dependencies.

Root architecture and leaf photosynthesis traits and associations with nitrogen-use efficiency in landrace-derived lines in wheat (2022)
Journal Article

Root system architecture (RSA) is important in optimizing the use of nitrogen. High-throughput phenotyping techniques may be used to study root system architecture traits under controlled environments. A root phenotyping platform, consisting of germi... Read More about Root architecture and leaf photosynthesis traits and associations with nitrogen-use efficiency in landrace-derived lines in wheat.

A review of ultrasonic sensing and machine learning methods to monitor industrial processes (2022)
Journal Article

Supervised machine learning techniques are increasingly being combined with ultrasonic sensor measurements owing to their strong performance. These techniques also offer advantages over calibration procedures of more complex fitting, improved general... Read More about A review of ultrasonic sensing and machine learning methods to monitor industrial processes.

Identification of QTL and underlying genes for root system architecture associated with nitrate nutrition in hexaploid wheat (2022)
Journal Article

The root system architecture (RSA) of a crop has a profound effect on the uptake of nutrients and consequently the potential yield. However, little is known about the genetic basis of RSA and resource adaptive responses in wheat (Triticum aestivum L.... Read More about Identification of QTL and underlying genes for root system architecture associated with nitrate nutrition in hexaploid wheat.

X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil (2022)
Journal Article

The spatial arrangement of the root system, termed root system architecture, is important for resource acquisition as it directly affects the soil zone explored. Methods for phenotyping roots are mostly destructive, which prevents analysis of roots o... Read More about X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil.

A fusion spatial attention approach for few-shot learning (2021)
Journal Article

Few-shot learning is a challenging problem in computer vision that aims to learn a new visual concept from very limited data. A core issue is that there is a large amount of uncertainty introduced by the small training set. For example, the few image... Read More about A fusion spatial attention approach for few-shot learning.

Domain adaptation and federated learning for ultrasonic monitoring of beer fermentation (2021)
Journal Article

Beer fermentation processes are traditionally monitored through sampling and off-line wort density measurements. In-line and on-line sensors would provide real-time data on the fermentation progress whilst minimising human involvement, enabling ident... Read More about Domain adaptation and federated learning for ultrasonic monitoring of beer fermentation.

Convolutional feature extraction for process monitoring using ultrasonic sensors (2021)
Journal Article

Ultrasonic sensors are a low-cost and in-line technique and can be combined with machine learning for industrial process monitoring. However, training accurate machine learning models for process monitoring using sensor data is dependant on the featu... Read More about Convolutional feature extraction for process monitoring using ultrasonic sensors.

Predicting Alcohol Concentration during Beer Fermentation Using Ultrasonic Measurements and Machine Learning (2021)
Journal Article

Beer fermentation is typically monitored by periodic sampling and off-line analysis. In-line sensors would remove the need for time-consuming manual operation and provide real-time evaluation of the fermenting media. This work uses a low-cost ultraso... Read More about Predicting Alcohol Concentration during Beer Fermentation Using Ultrasonic Measurements and Machine Learning.

Volumetric Segmentation of Cell Cycle Markers in Confocal Images Using Machine Learning and Deep Learning (2020)
Journal Article

© Copyright © 2020 Khan, Voß, Pound and French. Understanding plant growth processes is important for many aspects of biology and food security. Automating the observations of plant development—a process referred to as plant phenotyping—is increasing... Read More about Volumetric Segmentation of Cell Cycle Markers in Confocal Images Using Machine Learning and Deep Learning.

Three Dimensional Root CT Segmentation Using Multi-Resolution Encoder-Decoder Networks (2020)
Journal Article

© 1992-2012 IEEE. We address the complex problem of reliably segmenting root structure from soil in X-ray Computed Tomography (CT) images. We utilise a deep learning approach, and propose a state-of-the-art multi-resolution architecture based on enco... Read More about Three Dimensional Root CT Segmentation Using Multi-Resolution Encoder-Decoder Networks.

RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures (2019)
Journal Article

© The Author(s) 2019. Published by Oxford University Press. BACKGROUND: In recent years quantitative analysis of root growth has become increasingly important as a way to explore the influence of abiotic stress such as high temperature and drought on... Read More about RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures.

Recovering Wind-induced Plant motion in Dense Field Environments via Deep Learning and Multiple Object Tracking (2019)
Journal Article

Understanding the relationships between local environmental conditions and plant structure and function is critical for both fundamental science and for improving the performance of crops in field settings. Wind-induced plant motion is important in m... Read More about Recovering Wind-induced Plant motion in Dense Field Environments via Deep Learning and Multiple Object Tracking.

Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling (2019)
Journal Article

Plant phenotyping is the quantitative description of a plant’s physiological, biochemical and anatomical status which can be used in trait selection and helps to provide mechanisms to link underlying genetics with yield. Here, an active vision- based... Read More about Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling.

Identification of nitrogen-dependent QTL and underlying genes for root system architecture in hexaploid wheat (2019)
Other

The root system architecture (RSA) of a crop has a profound effect on the uptake of nutrients and consequently the potential yield. However, little is known about the genetic basis of RSA and resource dependent response in wheat (Triticum aestivum L.... Read More about Identification of nitrogen-dependent QTL and underlying genes for root system architecture in hexaploid wheat.

Deep Hourglass for Brain Tumor Segmentation (2019)
Book Chapter

The segmentation of a brain tumour in an MRI scan is a challenging task, in this paper we present our results for this problem via the BraTS 2018 challenge, consisting of 210 high grade glioma (HGG) and 75 low grade glioma (LGG) volumes for training.... Read More about Deep Hourglass for Brain Tumor Segmentation.

Plant phenotyping: an active vision cell for three-dimensional plant shoot reconstruction (2018)
Journal Article

© 2018 American Society of Plant Biologists. All rights reserved. Three-dimensional (3D) computer-generated models of plants are urgently needed to support both phenotyping and simulation-based studies such as photosynthesis modeling. However, the co... Read More about Plant phenotyping: an active vision cell for three-dimensional plant shoot reconstruction.

Uncovering the hidden half of plants using new advances in root phenotyping (2018)
Journal Article

© 2018 The Authors Major increases in crop yield are required to keep pace with population growth and climate change. Improvements to the architecture of crop roots promise to deliver increases in water and nutrient use efficiency but profiling the r... Read More about Uncovering the hidden half of plants using new advances in root phenotyping.

Deep learning for multi-task plant phenotyping (2017)
Conference Proceeding

Plant phenotyping has continued to pose a challenge to computer vision for many years. There is a particular demand to accurately quantify images of crops, and the natural variability and structure of these plants presents unique difficulties. Recent... Read More about Deep learning for multi-task plant phenotyping.