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The growing story of (ARABIDOPSIS) CRINKLY 4 (2016)
Journal Article
Czyzewicz, N., Nikonorova, N., Meyer, M. R., Sandal, P., Shah, S., Vu, L. D., …De Smet, I. (2016). The growing story of (ARABIDOPSIS) CRINKLY 4. Journal of Experimental Botany, 67(16), https://doi.org/10.1093/jxb/erw192

Receptor kinases play important roles in plant growth and development, but only few of them have been functionally characterized in depth. Over the past decade CRINKLY 4 (CR4)-related research has peaked as a result of a newly discovered role of ARAB... Read More about The growing story of (ARABIDOPSIS) CRINKLY 4.

Leaf photosynthesis and associations with grain yield, biomass and nitrogen-use efficiency in landraces, synthetic-derived lines and cultivars in wheat (2016)
Journal Article
Gaju, O., deSilva, J. G., Carvalho, P., Hawkesford, M. J., Griffiths, S., Greenland, A., & Foulkes, M. (2016). Leaf photosynthesis and associations with grain yield, biomass and nitrogen-use efficiency in landraces, synthetic-derived lines and cultivars in wheat. Field Crops Research, 193, 1-15. https://doi.org/10.1016/j.fcr.2016.04.018

Future genetic progress in wheat grain yield will depend on increasing above-ground biomass and this must be achieved without commensurate increases in N fertilizer inputs to minimise environmental impacts. Our objective was to quantify variation in... Read More about Leaf photosynthesis and associations with grain yield, biomass and nitrogen-use efficiency in landraces, synthetic-derived lines and cultivars in wheat.

Breeding for increased nitrogen-use efficiency: A review for wheat (T. aestivum L.) (2016)
Journal Article
Cormier, F., Foulkes, J., Hirel, B., Gouache, D., Moënne-Loccoz, Y., & Le Gouis, J. (2016). Breeding for increased nitrogen-use efficiency: A review for wheat (T. aestivum L.). Plant Breeding, 135(3), 255-278. https://doi.org/10.1111/pbr.12371

© 2016 Blackwell Verlag GmbH. Nitrogen fertilizer is the most used nutrient source in modern agriculture and represents significant environmental and production costs. In the meantime, the demand for grain increases and production per area has to inc... Read More about Breeding for increased nitrogen-use efficiency: A review for wheat (T. aestivum L.).

Inventory of metal complexes circulating in plant fluids: a reliable method based on HPLC coupled with dual elemental and high?resolution molecular mass spectrometric detection (2016)
Journal Article
Flis, P., Ouerdane, L., Grillet, L., Curie, C., Mari, S., & Lobinski, R. (2016). Inventory of metal complexes circulating in plant fluids: a reliable method based on HPLC coupled with dual elemental and high?resolution molecular mass spectrometric detection. New Phytologist, 211(3), 1129-1141. https://doi.org/10.1111/nph.13964

Description of metal species in plant fluids such as xylem, phloem or related saps remains a complex challenge usually addressed either by liquid chromatography-mass spectrometry, X-ray analysis or computational prediction. To date, none of these tec... Read More about Inventory of metal complexes circulating in plant fluids: a reliable method based on HPLC coupled with dual elemental and high?resolution molecular mass spectrometric detection.

Development and validation of a high-density SNP genotyping array for African Oil Palm (2016)
Journal Article
Kwong, Q. B., Teh, C. K., Ong, A. L., Heng, H. Y., Lee, H. L., Mohamed, M., …Appleton, D. R. (2016). Development and validation of a high-density SNP genotyping array for African Oil Palm. Molecular Plant, 9(8), https://doi.org/10.1016/j.molp.2016.04.010

High-density single nucleotide polymorphism (SNP) genotyping arrays are powerful tools that can measure the level of genetic polymorphism within a population. To develop a whole-genome SNP array for oil palms, SNP discovery was performed using deep r... Read More about Development and validation of a high-density SNP genotyping array for African Oil Palm.

Crosstalk between gibberellin signaling and iron uptake in plants: an Achilles’ heel for modern cereal varieties? (2016)
Journal Article
Von Wirén, N., & Bennett, M. J. (2016). Crosstalk between gibberellin signaling and iron uptake in plants: an Achilles’ heel for modern cereal varieties?. Developmental Cell, 37(2), 110-111. https://doi.org/10.1016/j.devcel.2016.04.003

© 2016 Elsevier Inc. Plants utilize sophisticated morphological and physiological mechanisms to acquire iron from soil. In this issue of Developmental Cell, Wild et al. (2016) find that the hormone signal gibberellic acid is key in integrating these... Read More about Crosstalk between gibberellin signaling and iron uptake in plants: an Achilles’ heel for modern cereal varieties?.

High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.) (2016)
Journal Article
Thomas, C. L., Graham, N. .., Hayden, R., Meacham, M. C., Neugebauer, K., Nightingale, M., …Broadley, M. R. (in press). High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.). Annals of Botany, 118(4), https://doi.org/10.1093/aob/mcw046

Background and Aims. Root traits can be selected for crop improvement. Techniques such as soil excavations can be used to screen root traits in the field, but are limited to genotypes that are well-adapted to field conditions. The aim of this study w... Read More about High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.).

Identification of novel quantitative trait loci for resistance to Fusarium seedling blight caused by Microdochium majus and M. nivale in wheat (2016)
Journal Article
Ren, R., Foulkes, J., Mayes, S., Yang, X., & Ray, R. V. (2016). Identification of novel quantitative trait loci for resistance to Fusarium seedling blight caused by Microdochium majus and M. nivale in wheat. Field Crops Research, 191, 1-12. https://doi.org/10.1016/j.fcr.2016.03.011

Microdochium nivale and Microdochium majus are important causal agents of Fusarium seedling blight (FSB) and Fusarium head blight (FHB) in wheat and other cereals worldwide. A doubled-haploid population derived from a cross between the winter wheat R... Read More about Identification of novel quantitative trait loci for resistance to Fusarium seedling blight caused by Microdochium majus and M. nivale in wheat.

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture (2016)
Journal Article
Piñeros, M. A., Larson, B. G., Shaff, J. E., Schneider, D. J., Falcão, A. X., Yuan, L., …Kochian, L. V. (2016). Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture. Journal of Integrative Plant Biology, 58(3), 230-241. https://doi.org/10.1111/jipb.12456

A plant's ability to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, can be strongly influenced by root system architecture (RSA), the three-dimensional distribution of the different root types in the... Read More about Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture.

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots (2016)
Journal Article
York, L. M., Carminati, A., Mooney, S. J., Ritz, K., & Bennett, M. J. (2016). The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots. Journal of Experimental Botany, 67(12), 3629-3643. https://doi.org/10.1093/jxb/erw108

Despite often being conceptualized as a thin layer of soil around roots, the rhizosphere is actually a dynamic system of interacting processes. Hiltner originally defined the rhizosphere as the soil influenced by plant roots. However, soil physicists... Read More about The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots.

Identification of gene modules associated with low temperatures response in Bambara groundnut by network-based analysis (2016)
Journal Article
Bonthala, V. S., Mayes, S., Moreton, J., Blythe, M. J., Wright, V., May, S., …Twycross, J. (2016). Identification of gene modules associated with low temperatures response in Bambara groundnut by network-based analysis. PLoS ONE, 11(2), Article e0148771. https://doi.org/10.1371/journal.pone.0148771

Bambara groundnut (Vigna subterranea (L.) Verdc.) is an African legume and is a promising underutilized crop with good seed nutritional values. Low temperature stress in a number of African countries at night, such as Botswana, can effect the growth... Read More about Identification of gene modules associated with low temperatures response in Bambara groundnut by network-based analysis.

Hydrotropism: analysis of the root response to a moisture gradient (2016)
Journal Article
Antoni, R., Dietrich, D., Bennett, M. J., & Rodriguez, P. L. (2016). Hydrotropism: analysis of the root response to a moisture gradient. Methods in Molecular Biology, 1398, 3-9. https://doi.org/10.1007/978-1-4939-3356-3_1

Hydrotropism is a genuine response of roots to a moisture gradient to avoid drought. An experimental system for the induction of hydrotropic root response in petri dishes was designed by pioneering groups in the field. This system uses split agar pla... Read More about Hydrotropism: analysis of the root response to a moisture gradient.

Accessing low-oxidation state taxanes: is taxadiene-4(5)-epoxide on the taxol biosynthetic pathway? (2016)
Journal Article
Barton, N. A., Marsh, B. J., Lewis, W., Narraidoo, N., Seymour, G. B., Fray, R. G., & Hayes, C. J. (in press). Accessing low-oxidation state taxanes: is taxadiene-4(5)-epoxide on the taxol biosynthetic pathway?. Chemical Science, 7(5), https://doi.org/10.1039/c5sc03463a

We have shown for the first time that taxadiene (3) can be epoxidised in a regio- and diastereoselective manner to provide taxadiene-4(5)-epoxide (12) as a single diastereoisomer, and that this epoxide can be rearranged to give taxa-4(20),11(12)-dien... Read More about Accessing low-oxidation state taxanes: is taxadiene-4(5)-epoxide on the taxol biosynthetic pathway?.

Genetic diversity and population structure of core watermelon (Citrullus lanatus) genotypes using DArTseq-based SNPs (2016)
Journal Article
Yang, X., Ren, R., Ray, R., Xu, J., Li, P., Zhang, M., …Kilian, A. (2016). Genetic diversity and population structure of core watermelon (Citrullus lanatus) genotypes using DArTseq-based SNPs. Plant Genetic Resources, 14(3), https://doi.org/10.1017/S1479262115000659

Watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai var. lanatus] is an economically important vegetable belonging to the Cucurbitaceae family. Genotypes that exhibit agronomically important traits are selected for the development of elite cultiva... Read More about Genetic diversity and population structure of core watermelon (Citrullus lanatus) genotypes using DArTseq-based SNPs.

Chlorophyll fluorescence parameters allow the rapid detection and differentiation of plant responses in three different wheat pathosystems (2016)
Journal Article
Ajigboye, O. O., Bousquet, L., Murchie, E. H., & Ray, R. V. (2016). Chlorophyll fluorescence parameters allow the rapid detection and differentiation of plant responses in three different wheat pathosystems. Functional Plant Biology, 43(4), 356-369. https://doi.org/10.1071/FP15280

The present study was undertaken to identify chlorophyll fluorescence (CF) parameters that can quantify changes in PSII associated with plant responses in three different wheat pathosystems of foliar, stem-base and ear diseases. The pathosystems incl... Read More about Chlorophyll fluorescence parameters allow the rapid detection and differentiation of plant responses in three different wheat pathosystems.

Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images (2015)
Journal Article
Mairhofer, S., Johnson, J., Sturrock, C., Bennett, M. J., Mooney, S. J., & Pridmore, T. P. (2016). Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images. Machine Vision and Applications, 27(5), 721-734. https://doi.org/10.1007/s00138-015-0733-7

We propose a visual object tracking framework for the extraction of multiple interacting plant root systems from three-dimensional X-ray micro computed tomography images of plants grown in soil. Our method is based on a level set framework guided by... Read More about Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images.

Leaf segmentation in plant phenotyping: a collation study (2015)
Journal Article
Scharr, H., Minervini, M., French, A. P., Klukas, C., Kramer, D. M., Liu, X., …Tsaftaris, S. A. (2016). Leaf segmentation in plant phenotyping: a collation study. Machine Vision and Applications, 27(4), 585-606. https://doi.org/10.1007/s00138-015-0737-3

Image-based plant phenotyping is a growing application area of computer vision in agriculture. A key task is the segmentation of all individual leaves in images. Here we focus on the most common rosette model plants, Arabidopsis and young tobacco. Al... Read More about Leaf segmentation in plant phenotyping: a collation study.

Extracting multiple interacting root systems using X-ray microcomputed tomography (2015)
Journal Article
Mairhofer, S., Sturrock, C., Mooney, S. J., Pridmore, T. P., & Bennett, M. J. (2015). Extracting multiple interacting root systems using X-ray microcomputed tomography. Plant Journal, 84(5), 1034-1043. https://doi.org/10.1111/tpj.13047

© 2015 The Authors The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd. Root system interactions and competition for resources are active areas of research that contribute to our understanding of how roots perc... Read More about Extracting multiple interacting root systems using X-ray microcomputed tomography.

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool (2015)
Journal Article
Winfield, M. O., King, I., Allen, A. M., Burridge, A. J., Barker, G. L. A., Benbow, H. R., …Edwards, K. J. (2016). High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool. Plant Biotechnology Journal, 14(5), 1195-1206. https://doi.org/10.1111/pbi.12485

In wheat, a lack of genetic diversity between breeding lines has been recognized as a significant block to future yield increases. Species belonging to bread wheat's secondary and tertiary gene pools harbour a much greater level of genetic variabilit... Read More about High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool.