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Infobiotics workbench: a P systems based tool for systems and synthetic biology

Blakes, Jonathan; Twycross, Jamie; Konur, Savas; Romero-Campero, Francisco Jose; Krasnogor, Natalio; Gheorghe, Marian

Authors

Jonathan Blakes

Savas Konur

Francisco Jose Romero-Campero

Natalio Krasnogor

Marian Gheorghe



Abstract

This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research.

Citation

Blakes, J., Twycross, J., Konur, S., Romero-Campero, F. J., Krasnogor, N., & Gheorghe, M. (2014). Infobiotics workbench: a P systems based tool for systems and synthetic biology. In Applications of membrane computing in systems and synthetic biology. Springer International Publishing. https://doi.org/10.1007/978-3-319-03191-0_1

Acceptance Date Dec 1, 2013
Online Publication Date Dec 18, 2013
Publication Date Jan 17, 2014
Deposit Date Sep 19, 2017
Publicly Available Date Sep 19, 2017
Peer Reviewed Peer Reviewed
Issue 7
Series Title Emergence, complexity and computation
Book Title Applications of membrane computing in systems and synthetic biology
ISBN 978-3-319-03191-0
DOI https://doi.org/10.1007/978-3-319-03191-0_1
Public URL http://eprints.nottingham.ac.uk/id/eprint/46465
Publisher URL https://link.springer.com/chapter/10.1007/978-3-319-03191-0_1
Copyright Statement Copyright information regarding this work can be found at the following address: http://eprints.nottingh.../end_user_agreement.pdf

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Copyright Statement
Copyright information regarding this work can be found at the following address: http://eprints.nottingham.ac.uk/end_user_agreement.pdf





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