Infobiotics workbench: a P systems based tool for systems and synthetic biology

Blakes, Jonathan; Twycross, Jamie; Konur, Savas; Romero-Campero, Francisco Jose; Krasnogor, Natalio; Gheorghe, Marian

Abstract

This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research.

Citation

Blakes, J., Twycross, J., Konur, S., Romero-Campero, F. J., Krasnogor, N., & Gheorghe, M. (2014). Infobiotics workbench: a P systems based tool for systems and synthetic biology. In Applications of membrane computing in systems and synthetic biology. Springer International Publishing. https://doi.org/10.1007/978-3-319-03191-0_1

• Acceptance Date: Dec 1, 2013
• Online Publication Date: Dec 18, 2013
• Publication Date: Jan 17, 2014
• Deposit Date: Sep 19, 2017
• Publicly Available Date: Sep 19, 2017
• Peer Reviewed: Peer Reviewed
• Issue: 7
• Series Title: Emergence, complexity and computation
• Book Title: Applications of membrane computing in systems and synthetic biology
• ISBN: 978-3-319-03191-0
• DOI: https://doi.org/10.1007/978-3-319-03191-0_1
• Public URL: https://nottingham-repository.worktribe.com/output/721481
• Publisher URL: https://link.springer.com/chapter/10.1007/978-3-319-03191-0_1
• Contract Date: Sep 19, 2017