Skip to main content

Research Repository

Advanced Search

Outputs (76)

Herbal leys have no effect on soil porosity, earthworm abundance, and microbial community composition compared to a grass-clover ley in a sheep grazed grassland after 2-years (2024)
Journal Article
Cooledge, E. C., Sturrock, C. J., Atkinson, B. S., Mooney, S. J., Brailsford, F. L., Murphy, D. V., …Jones, D. L. (2024). Herbal leys have no effect on soil porosity, earthworm abundance, and microbial community composition compared to a grass-clover ley in a sheep grazed grassland after 2-years. Agriculture, Ecosystems and Environment, 365, Article 108928. https://doi.org/10.1016/j.agee.2024.108928

Herbal leys (multispecies swards) can potentially deliver greater agronomic and environmental benefits than conventional grass-clover swards in grazed agroecosystems. However, despite their popularity in agri-environment schemes, little is known abou... Read More about Herbal leys have no effect on soil porosity, earthworm abundance, and microbial community composition compared to a grass-clover ley in a sheep grazed grassland after 2-years.

The effects of soil compaction on wheat seedling root growth are specific to soil texture and soil moisture status (2023)
Journal Article
Yu, C., Mawodza, T., Atkinson, B. S., Atkinson, J. A., Sturrock, C. J., Whalley, R., …Mooney, S. J. (2024). The effects of soil compaction on wheat seedling root growth are specific to soil texture and soil moisture status. Rhizosphere, 29, Article 100838. https://doi.org/10.1016/j.rhisph.2023.100838

Soil structure is a crucial soil physical property that determines a soil's ability to support the growth and development of plants. Soil compaction modifies soil structure by reducing pore space between soil particles thereby leading to a denser soi... Read More about The effects of soil compaction on wheat seedling root growth are specific to soil texture and soil moisture status.

The effect of organic matter amendments on soil surface stability in conventionally cultivated arable fields (2023)
Journal Article
Stroud, J. L., Kemp, S. J., & Sturrock, C. J. (2024). The effect of organic matter amendments on soil surface stability in conventionally cultivated arable fields. Soil Use and Management, 40(1), Article e12985. https://doi.org/10.1111/sum.12985

In this study, new and traditional organic wastes (green waste compost, farmyard manure (FYM), anaerobic digestate or straw) were ploughed into an arable field experiment at a range of rates (1–3 t C ha−1) and under spring and winter cropping rotatio... Read More about The effect of organic matter amendments on soil surface stability in conventionally cultivated arable fields.

Soil structure has a greater effect on the rooting of wheat (Triticum aestivum L.) than nitrogen fertilisation rate or genotype (2023)
Journal Article
Mawodza, T., Zhou, H., Atkinson, B. S., Atkinson, J. A., Sturrock, C. J., Riche, A. B., …Mooney, S. J. (2023). Soil structure has a greater effect on the rooting of wheat (Triticum aestivum L.) than nitrogen fertilisation rate or genotype. Rhizosphere, 27, Article 100770. https://doi.org/10.1016/j.rhisph.2023.100770

Despite extensive research over the last century concerning the application of nitrogen fertilizer to support the production of wheat (Triticum aestivum L.), our understanding on how this impacts on root growth in subsoils is limited. In this study,... Read More about Soil structure has a greater effect on the rooting of wheat (Triticum aestivum L.) than nitrogen fertilisation rate or genotype.

ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana (2023)
Journal Article
Zubrycka, A., Dambire, C., Dalle Carbonare, L., Sharma, G., Boeckx, T., Swarup, K., …Holdsworth, M. J. (2023). ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana. Nature Communications, 14, Article 4665. https://doi.org/10.1038/s41467-023-40366-y

Oxygen is a key signalling component of plant biology, and whilst an oxygen-sensing mechanism was previously described in Arabidopsis thaliana, key features of the associated PLANT CYSTEINE OXIDASE (PCO) N-degron pathway and Group VII ETHYLENE RESPON... Read More about ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana.

Optimising the Scanning Process: Demystifying the Dark Art of Optimising Microtomography Scan Settings (2022)
Book Chapter
Sturrock, C. J. (2022). Optimising the Scanning Process: Demystifying the Dark Art of Optimising Microtomography Scan Settings. In S. Jon Mooney, I. M. Young, R. J. Heck, & S. Peth (Eds.), X-ray Imaging of the Soil Porous Architecture (39-55). https://doi.org/10.1007/978-3-031-12176-0_4

X-ray Computed Tomography (X-ray CT) is now becoming an accessible technology to quantify soil structure metrics. However, optimising images from X-ray CT systems remains a challenging task. Understanding the influence of the wide range of settings t... Read More about Optimising the Scanning Process: Demystifying the Dark Art of Optimising Microtomography Scan Settings.

Hydraulic flux–responsive hormone redistribution determines root branching (2022)
Journal Article
Mehra, P., Pandey, B. K., Melebari, D., Banda, J., Leftley, N., Couvreur, V., …Bennett, M. J. (2022). Hydraulic flux–responsive hormone redistribution determines root branching. Science, 378(6621), 762-768. https://doi.org/10.1126/science.add3771

Plant roots exhibit plasticity in their branching patterns to forage efficiently for heterogeneously distributed resources, such as soil water. The xerobranching response represses lateral root formation when roots lose contact with water. Here, we s... Read More about Hydraulic flux–responsive hormone redistribution determines root branching.

Defining the scope for altering rice leaf anatomy to improve photosynthesis: a modelling approach (2022)
Journal Article
Xiao, Y., Sloan, J., Hepworth, C., Fradera-Soler, M., Mathers, A., Thorley, R., …Zhu, X. (2023). Defining the scope for altering rice leaf anatomy to improve photosynthesis: a modelling approach. New Phytologist, 237(2), 441-453. https://doi.org/10.1111/nph.18564

Leaf structure plays an important role in photosynthesis. However, the causal relationship and the quantitative importance of any single structural parameter to the overall photosynthetic performance of a leaf remains open to debate. In this paper, w... Read More about Defining the scope for altering rice leaf anatomy to improve photosynthesis: a modelling approach.

Anatomy, histology, development and functions of Ossa cordis: A review (2022)
Journal Article
Best, A., Egerbacher, M., Swaine, S., Pérez, W., Alibhai, A., Rutland, P., …Rutland, C. S. (2022). Anatomy, histology, development and functions of Ossa cordis: A review. Anatomia, Histologia, Embryologia, 51(6), 683-695. https://doi.org/10.1111/ahe.12861

This systematic review highlights the similarities and variations in Ossa cordis prevalence, histology and anatomical location between differing veterinary species and in humans. In addition, it also identifies associated factors such as aging and ca... Read More about Anatomy, histology, development and functions of Ossa cordis: A review.

Anatomy, histology, development and functions of Ossa cordis: A review (2022)
Journal Article
Best, A., Egerbacher, M., Swaine, S., Pérez, W., Alibhai, A., Rutland, P., …Rutland, C. S. (2022). Anatomy, histology, development and functions of Ossa cordis: A review. Anatomia, Histologia, Embryologia, 51(6), 683-695. https://doi.org/10.1111/ahe.12861

This systematic review highlights the similarities and variations in Ossa cordis prevalence, histology and anatomical location between differing veterinary species and in humans. In addition, it also identifies associated factors such as aging and ca... Read More about Anatomy, histology, development and functions of Ossa cordis: A review.

Root angle is controlled by EGT1in cereal crops employing anantigravitropic mechanism (2022)
Journal Article
Fusi, R., Rosignoli, S., Lou, H., Sangiorgi, G., Bovina, R., Pattem, J. K., …Salvi, S. (2022). Root angle is controlled by EGT1in cereal crops employing anantigravitropic mechanism. Proceedings of the National Academy of Sciences,

Root angle in crops represents a key trait for efficient capture of soil resources. Root angle is determined by competing gravitropic versus anti-gravitropic offset (AGO) mechanisms. Here we report a new root angle regulatory gene termed ENHANCED GRA... Read More about Root angle is controlled by EGT1in cereal crops employing anantigravitropic mechanism.

Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms (2022)
Journal Article
Huang, G., Kilic, A., Karady, M., Zhang, J., Mehra, P., Song, X., …Pandey, B. K. (2022). Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms. Proceedings of the National Academy of Sciences, 119(30), Article e2201072119. https://doi.org/10.1073/pnas.2201072119

Soil compaction represents a major agronomic challenge, inhibiting root elongation and impacting crop yields. Roots use ethylene to sense soil compaction as the restricted air space causes this gaseous signal to accumulate around root tips. Ethylene... Read More about Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms.

Zero tillage has important consequences for soil pore architecture and hydraulic transport: A review (2022)
Journal Article
Wardak, D. L. R., Padia, F. N., de Heer, M. I., Sturrock, C. J., & Mooney, S. J. (2022). Zero tillage has important consequences for soil pore architecture and hydraulic transport: A review. Geoderma, 422, Article 115927. https://doi.org/10.1016/j.geoderma.2022.115927

Following the adoption of zero-tillage (ZT) from conventional tillage (CT), the soil pore network undergoes immediate and significant changes. As soil remains undisturbed for an extended period, a soil structure emerges that is primarily generated an... Read More about Zero tillage has important consequences for soil pore architecture and hydraulic transport: A review.

X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil (2022)
Journal Article
Griffiths, M., Mellor, N., Sturrock, C. J., Atkinson, B. S., Johnson, J., Mairhofer, S., …Wells, D. M. (2022). X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil. Plant Phenome Journal, 5(1), Article e20036. https://doi.org/10.1002/ppj2.20036

The spatial arrangement of the root system, termed root system architecture, is important for resource acquisition as it directly affects the soil zone explored. Methods for phenotyping roots are mostly destructive, which prevents analysis of roots o... Read More about X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil.

Discovery Of A Bone In Chimpanzee Hearts (2022)
Journal Article
Sturrock, C. J., Stanford, K., Moittie, S., Baiker, K., Redrobe, S., & Rutland, C. S. (2022). Discovery Of A Bone In Chimpanzee Hearts. Frontiers for Young Minds, 9, Article 592105. https://doi.org/10.3389/frym.2021.592105

The os cordis (heart bone) is a rare bone found only in a few animals in the world. We discovered an os cordis in some chimpanzees. The os cordis was found in males and females, and in young and old animals. It was not present in chimps with healthy... Read More about Discovery Of A Bone In Chimpanzee Hearts.

Reducing sugar and aroma in a confectionery gel without compromising flavour through addition of air inclusions (2021)
Journal Article
Su, K., Festring, D., Ayed, C., Yang, Q., Sturrock, C. J., Linforth, R., …Fisk, I. (2021). Reducing sugar and aroma in a confectionery gel without compromising flavour through addition of air inclusions. Food Chemistry, 354, Article 129579. https://doi.org/10.1016/j.foodchem.2021.129579

Sugar plays an important role in both the flavour and structure of confectionery. Targets have been set to reduce sugar; however, common strategies often result in changes in flavour and consumer rejection. In this study, an approach was developed to... Read More about Reducing sugar and aroma in a confectionery gel without compromising flavour through addition of air inclusions.

Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging (2021)
Journal Article
Hu, Z., Riche, A. B., Hawkesford, M. J., Whalley, W. R., Atkinson, B. S., Sturrock, C. J., & Mooney, S. J. (2021). Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging. Plant Methods, 17(1), Article 26. https://doi.org/10.1186/s13007-021-00726-5

© 2021, The Author(s). Background: Wheat spike architecture is a key determinant of multiple grain yield components and detailed examination of spike morphometric traits is beneficial to explain wheat grain yield and the effects of differing agronomy... Read More about Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging.

Morphology, adipocyte size, and fatty acid analysis of dairy cattle digital cushions, and the effect of body condition score and age (2021)
Journal Article
Newsome, R. F., Mostyn, A., Wilson, J. P., Alibhai, A., Bollard, N., Randall, L., …Rutland, C. S. (2021). Morphology, adipocyte size, and fatty acid analysis of dairy cattle digital cushions, and the effect of body condition score and age. Journal of Dairy Science, 104(5), https://doi.org/10.3168/jds.2020-19388

The digital cushion is an essential part of maintaining a healthy foot, working to dissipate foot strike and body weight forces and lameness from claw horn disruption lesions. Despite the importance of the digital cushion, little is known about the b... Read More about Morphology, adipocyte size, and fatty acid analysis of dairy cattle digital cushions, and the effect of body condition score and age.

Plant roots sense soil compaction through restricted ethylene diffusion (2021)
Journal Article
Pandey, B. K., Huang, G., Bhosale, R., Hartman, S., Sturrock, C. J., Jose, L., …Bennett, M. J. (2021). Plant roots sense soil compaction through restricted ethylene diffusion. Science, 371(6526), 276-280. https://doi.org/10.1126/science.abf3013

© 2021 The Authors, some rights reserved. Soil compaction represents a major challenge for modern agriculture. Compaction is intuitively thought to reduce root growth by limiting the ability of roots to penetrate harder soils. We report that root gro... Read More about Plant roots sense soil compaction through restricted ethylene diffusion.

Preparation, Scanning and Analysis of Duckweed Using X-Ray Computed Microtomography (2021)
Journal Article
Jones, D. H., Atkinson, B., Ware, A., Sturrock, C. J., Bishopp, A., & Wells, D. M. (2021). Preparation, Scanning and Analysis of Duckweed Using X-Ray Computed Microtomography. Frontiers in Plant Science, 11, Article 617830. https://doi.org/10.3389/fpls.2020.617830

© Copyright © 2021 Jones, Atkinson, Ware, Sturrock, Bishopp and Wells. Quantification of anatomical and compositional features underpins both fundamental and applied studies of plant structure and function. Relatively few non-invasive techniques are... Read More about Preparation, Scanning and Analysis of Duckweed Using X-Ray Computed Microtomography.

The role of sodium chloride in the sensory and physico-chemical properties of sweet biscuits (2021)
Journal Article
Ayed, C., Lim, M., Nawaz, K., Macnaughtan, W., Sturrock, C. J., Hill, S. E., …Fisk, I. D. (2021). The role of sodium chloride in the sensory and physico-chemical properties of sweet biscuits. Food Chemistry: X, 9, Article 100115. https://doi.org/10.1016/j.fochx.2021.100115

© 2021 Salt is included in many foods which consumers do not regard as salty. This “hidden-salt” may offer functional benefits but is often overlooked in sodium reduction strategies. This study investigated its role in shortbread-like sweet biscuits... Read More about The role of sodium chloride in the sensory and physico-chemical properties of sweet biscuits.

The Importance of Anatomy (2020)
Journal Article
Stanford, K., Rutland, S., Sturrock, C. J., & Rutland, C. S. (2020). The Importance of Anatomy. Frontiers for Young Minds, 8, Article 546763. https://doi.org/10.3389/frym.2020.546763

Anatomy is the knowledge about the structure of the bodies of animals and people. This includes information about blood vessels, organs, the skeleton, and nerves. But have you ever wondered where the anatomical information in science books and websit... Read More about The Importance of Anatomy.

Discovery of os cordis in the cardiac skeleton of chimpanzees (Pan troglodytes) (2020)
Journal Article
Moittié, S., Baiker, K., Strong, V., Cousins, E., White, K., Liptovszky, M., …Rutland, C. S. (2020). Discovery of os cordis in the cardiac skeleton of chimpanzees (Pan troglodytes). Scientific Reports, 10(1), https://doi.org/10.1038/s41598-020-66345-7

© 2020, The Author(s). Cardiovascular diseases, especially idiopathic myocardial fibrosis, is one of the most significant causes of morbidity and mortality in captive great apes. This study compared the structure and morphology of 16 hearts from chim... Read More about Discovery of os cordis in the cardiac skeleton of chimpanzees (Pan troglodytes).

Impact of fruit orientation and pelleting material on water uptake and germination performance in artificial substrate for sugar beet (2020)
Journal Article
Blunk, S., Hoffer, J., Brosda, S., de Heer, M. I., Sturrock, C. J., & Mooney, S. J. (2020). Impact of fruit orientation and pelleting material on water uptake and germination performance in artificial substrate for sugar beet. PLoS ONE, 15(5), Article e0232875. https://doi.org/10.1371/journal.pone.0232875

© 2020 Blunk et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are cred... Read More about Impact of fruit orientation and pelleting material on water uptake and germination performance in artificial substrate for sugar beet.

Three Dimensional Root CT Segmentation Using Multi-Resolution Encoder-Decoder Networks (2020)
Journal Article
Soltaninejad, M., Sturrock, C. J., Griffiths, M., Pridmore, T. P., & Pound, M. P. (2020). Three Dimensional Root CT Segmentation Using Multi-Resolution Encoder-Decoder Networks. IEEE Transactions on Image Processing, 29, 6667-6679. https://doi.org/10.1109/TIP.2020.2992893

© 1992-2012 IEEE. We address the complex problem of reliably segmenting root structure from soil in X-ray Computed Tomography (CT) images. We utilise a deep learning approach, and propose a state-of-the-art multi-resolution architecture based on enco... Read More about Three Dimensional Root CT Segmentation Using Multi-Resolution Encoder-Decoder Networks.

Strigolactones control root system architecture and tip anatomy in solanum lycopersicum l. Plants under p starvation (2020)
Journal Article
Schubert, A., Santoro, V., Sturrock, C. J., Gresta, F., Ertani, A., Cardinale, F., …Celi, L. (2020). Strigolactones control root system architecture and tip anatomy in solanum lycopersicum l. Plants under p starvation. Plants, 9(5), Article 612. https://doi.org/10.3390/plants9050612

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. The hormones strigolactones accumulate in plant roots under phosphorus (P) shortage, inducing variations in plant phenotype. In this study, we aimed at understanding whether strigolactones con... Read More about Strigolactones control root system architecture and tip anatomy in solanum lycopersicum l. Plants under p starvation.

Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample (2020)
Journal Article
Ojeda-Magaña, B., Ruelas, R., Quintanilla-Domínguez, J., Robledo-Hernández, J. G., Sturrock, C. J., Mooney, S. J., & Tarquis, A. M. (2020). Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample. Applied Mathematical Modelling, 85, 360-377. https://doi.org/10.1016/j.apm.2020.04.021

© 2020 Elsevier Inc. In this study, we scanned the core of a cylindrical soil sample (60mm diameter and 100mm height) by X-ray Computed Tomography (CT) producing 300 consecutive 2D digital images with 16-bit gray level depth and a resolution of 32 mi... Read More about Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample.

CEP receptor signalling controls root system architecture in Arabidopsis and Medicago (2020)
Journal Article
Chapman, K., Ivanovici, A., Taleski, M., Sturrock, C. J., Ng, J. L., Mohd‐Radzman, N. A., …Djordjevic, M. A. (2020). CEP receptor signalling controls root system architecture in Arabidopsis and Medicago. New Phytologist, 226(6), 1809-1821. https://doi.org/10.1111/nph.16483

© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust Root system architecture (RSA) influences the effectiveness of resources acquisition from soils but the genetic networks that control RSA remain largely unclear. We used rhizoboxes, X-r... Read More about CEP receptor signalling controls root system architecture in Arabidopsis and Medicago.

Mesophyll porosity is modulated by the presence of functional stomata (2019)
Journal Article
Lundgren, M. R., Mathers, A., Baillie, A. L., Dunn, J., Wilson, M. J., Hunt, L., …Fleming, A. J. (2019). Mesophyll porosity is modulated by the presence of functional stomata. Nature Communications, 10(1), Article 2825. https://doi.org/10.1038/s41467-019-10826-5

The formation of stomata and leaf mesophyll airspace must be coordinated to establish an efficient and robust network that facilitates gas exchange for photosynthesis, however the mechanism by which this coordinated development occurs remains unclear... Read More about Mesophyll porosity is modulated by the presence of functional stomata.

Physics of animal health: on the mechano-biology of hoof growth and form (2019)
Journal Article
Al-Agele, R., Paul, E., Taylor, S., Watson, C., Sturrock, C., Drakopoulos, M., …Rauch, C. (2019). Physics of animal health: on the mechano-biology of hoof growth and form. Interface, 16(155), 1-12. https://doi.org/10.1098/rsif.2019.0214

Global inequalities in economic access and agriculture productivity imply that a large number of developing countries rely on working equids for transport/agriculture/mining. Therefore, the understanding of hoof conditions/shape variations affecting... Read More about Physics of animal health: on the mechano-biology of hoof growth and form.

Emergent Protective Organogenesis in Date Palms: A Morpho-devo-dynamic Adaptive Strategy During Early Development (2019)
Journal Article
Xiao, T., Raygoza, A. A., Pérez, J. C., Kirschner, G., Deng, Y., Atkinson, B., …Blilou, I. (2019). Emergent Protective Organogenesis in Date Palms: A Morpho-devo-dynamic Adaptive Strategy During Early Development. Plant Cell, 31(8), 1751-1766. https://doi.org/10.1105/tpc.19.00008

Desert plants have developed mechanisms for adapting to hostile desert conditions, yet these mechanisms remain poorly understood. Here, we describe two unique modes used by desert date palms (Phoenix dactylifera L.) to protect their meristematic tiss... Read More about Emergent Protective Organogenesis in Date Palms: A Morpho-devo-dynamic Adaptive Strategy During Early Development.

The Anatomy, Histology and Physiology of the Healthy and Lame Equine Hoof (2019)
Book Chapter
Al-Agele, R., Paul, E., Kubale Dvojmoc, V., Sturrock, C. J., Rauch, C., & Rutland, C. S. (2019). The Anatomy, Histology and Physiology of the Healthy and Lame Equine Hoof. In Veterinary Anatomy and Physiology. IntechOpen. https://doi.org/10.5772/intechopen.84514

Satisfactory investigations of the equine foot appear to be limited by the histomorphological complexity of internal hoof structures. Foot lameness is considered to be one of the most debilitating pathological disorders of the equine foot. In most sp... Read More about The Anatomy, Histology and Physiology of the Healthy and Lame Equine Hoof.

The role of plant species and soil condition in the structural development of the rhizosphere (2019)
Journal Article
Helliwell, J., Sturrock, C., Miller, A., Whalley, W., & Mooney, S. (2019). The role of plant species and soil condition in the structural development of the rhizosphere. Plant, Cell and Environment, 42(6), 1974-1986. https://doi.org/10.1111/pce.13529

© 2019 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd Roots naturally exert axial and radial pressures during growth, which alter the structural arrangement of soil at the root–soil interface. However, empirical models s... Read More about The role of plant species and soil condition in the structural development of the rhizosphere.

X-ray microtomography to evaluate the efficacy of paraffin wax coating for soil bulk density evaluation (2018)
Journal Article
Pires, L. F., Mooney, S. J., Auler, A. C., Atkinson, B., & Sturrock, C. J. (2019). X-ray microtomography to evaluate the efficacy of paraffin wax coating for soil bulk density evaluation. Geoderma, 337, 935-944. https://doi.org/10.1016/j.geoderma.2018.11.017

The paraffin-coated method is a well-used approach to measure the soil bulk density (BD). BD is a physical property of great importance for studies of soil quality and health. Therefore, representative measurements of this property are highly valued.... Read More about X-ray microtomography to evaluate the efficacy of paraffin wax coating for soil bulk density evaluation.

Investigating the microstructure of plant leaves in 3D with lab-based X-ray computed tomography (2018)
Journal Article
Mathers, A. W., Hepworth, C., Baillie, A. L., Sloan, J., Jones, H., Lundgren, M., …Sturrock, C. J. (2018). Investigating the microstructure of plant leaves in 3D with lab-based X-ray computed tomography. Plant Methods, 14(1), Article 99. https://doi.org/10.1186/s13007-018-0367-7

Background Leaf cellular architecture plays an important role in setting limits for carbon assimilation and, thus, photosynthetic performance. However, the low density, fine structure, and sensitivity to desiccation of plant tissue has presented c... Read More about Investigating the microstructure of plant leaves in 3D with lab-based X-ray computed tomography.

Seed priming enhances early growth and improves area of soil exploration by roots (2018)
Journal Article
Blunk, S., De Heer, M. I., Malik, A. H., Fredlund, K., Ekblad, T., Sturrock, C. J., & Mooney, S. J. (2019). Seed priming enhances early growth and improves area of soil exploration by roots. Environmental and Experimental Botany, 158, 1-11. https://doi.org/10.1016/j.envexpbot.2018.11.003

Introduction: Seed priming has been conducted for centuries with growth advantages reported for a variety of different crops. Previous work has suggested priming does not offer a yield advantage despite an increased early growth if grown under ideal... Read More about Seed priming enhances early growth and improves area of soil exploration by roots.

Root architecture governs plasticity in response to drought (2018)
Journal Article
Fry, E. L., Evans, A. L., Sturrock, C. J., Bullock, J. M., & Bardgett, R. D. (2018). Root architecture governs plasticity in response to drought. Plant and Soil, 433(1-2), 189-200. https://doi.org/10.1007/s11104-018-3824-1

Aims Root characteristics are important for predicting plant and ecosystem responses to resource scarcity. Simple, categorical traits for roots could be broadly applied to ecosystem function and restoration experiments, but they need to be evaluated... Read More about Root architecture governs plasticity in response to drought.

The xerobranching response represses lateral root formation when roots are not in contact with water (2018)
Journal Article
Orman-Ligeza, B., Morris, E. C., Parizot, B., Lavigne, T., Babé, A., Ligeza, A., …Draye, X. (2018). The xerobranching response represses lateral root formation when roots are not in contact with water. Current Biology, 28(19), 3165-3173.e5. https://doi.org/10.1016/j.cub.2018.07.074

© 2018 Elsevier Ltd Efficient soil exploration by roots represents an important target for crop improvement and food security [1, 2]. Lateral root (LR) formation is a key trait for optimizing soil foraging for crucial resources such as water and nutr... Read More about The xerobranching response represses lateral root formation when roots are not in contact with water.

Soil seedbed engineering and its impact on germination and establishment in sugar beet (Beta vulgaris L.) as affected by seed-soil contact (2018)
Journal Article
Blunk, S., De Heer, M. I., Sturrock, C., & Mooney, S. J. (2018). Soil seedbed engineering and its impact on germination and establishment in sugar beet (Beta vulgaris L.) as affected by seed-soil contact. Seed Science Research, 28(3), 236-244. https://doi.org/10.1017/S0960258518000168

Seed-soil contact plays an essential role in the process of germination as seeds absorb water through direct contact with the moist soil aggregates that surround them. Factors influencing seed-soil contact can be considered as those pertaining to soi... Read More about Soil seedbed engineering and its impact on germination and establishment in sugar beet (Beta vulgaris L.) as affected by seed-soil contact.

Erratum: Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate (Nature communications (2018) 9 1 (1408)) (2018)
Journal Article
Giri, J., Bhosale, R., Huang, G., Pandey, B. K., Parker, H., Zappala, S., …Bennett, M. J. (2018). Erratum: Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate (Nature communications (2018) 9 1 (1408)). Nature Communications, 9(1), Article 1810. https://doi.org/10.1038/s41467-018-04280-y

The original version of this Article omitted the following from the Acknowledgements:'We also thank DBT-CREST BT/HRD/03/01/2002.'This has been corrected in both the PDF and HTML versions of the Article.

Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate (2018)
Journal Article
Giri, J., Bhosale, R., Huang, G., Pandey, B. K., Parker, H., Zappala, S., …Bennett, M. J. (2018). Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications, 9(1), https://doi.org/10.1038/s41467-018-03850-4

Root traits such as root angle and hair length influence resource acquisition particularly for immobile nutrients like phosphorus (P). Here, we attempted to modify root angle in rice by disrupting the OsAUX1 auxin influx transporter gene in an effort... Read More about Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.

TopCap: a tool to quantify soil surface topology and subsurface structure (2018)
Journal Article
Garbout, A., Sturrock, C. J., Armenise, E., Ahn, S., Simmons, R. W., Doerr, S., …Mooney, S. J. (2018). TopCap: a tool to quantify soil surface topology and subsurface structure. Vadose Zone Journal, 17(1), https://doi.org/10.2136/vzj2017.05.0091

The surface of a material such as soil, as characterised by its topology and roughness, typically has a profound effect on its functional behaviour. Whilst non-destructive imaging techniques such as X-ray Computed Tomography (CT) have been extensivel... Read More about TopCap: a tool to quantify soil surface topology and subsurface structure.

The application of X-ray micro Computed Tomography imaging for tracing particle movement in soil (2018)
Journal Article
Grayling, K., Young, S. D., Roberts, C. J., de Heer, M. I., Shirley, I., Sturrock, C., & Mooney, S. J. (2018). The application of X-ray micro Computed Tomography imaging for tracing particle movement in soil. Geoderma, 321, https://doi.org/10.1016/j.geoderma.2018.01.038

Despite significant advances in recent years in the application of sensing and imaging technologies to the study of the hydraulic behaviour of soils, our understanding of how solutes and particulate matter move through soil is still limited and often... Read More about The application of X-ray micro Computed Tomography imaging for tracing particle movement in soil.

LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice (2017)
Journal Article
Wang, L., Guo, M., Li, Y., Ruan, W., Mo, X., Wu, Z., …Mao, C. (in press). LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice. Journal of Experimental Botany, https://doi.org/10.1093/jxb/erx427

Root system architecture is very important for plant growth and crop yield. It is essential for nutrient and water uptake, anchoring, and mechanical support. Root growth angle (RGA) is a vital constituent of root system architecture and is used as a... Read More about LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.

The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface (2017)
Journal Article
Helliwell, J., Sturrock, C. J., Mairhofer, S., Craigon, J., Ashton, R., Miller, A., …Mooney, S. J. (in press). The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface. Scientific Reports, 7(14875), https://doi.org/10.1038/s41598-017-14904-w

The rhizosphere is the zone of soil infuenced by a plant root and is critical for plant health and nutrient acquisition. All below ground resources must pass through this dynamic zone prior to their capture by plant roots. However, researching the un... Read More about The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface.

Soil seal development under simulated rainfall: structural, physical and hydrological dynamics (2017)
Journal Article
Armenise, E., Simmons, R. W., Ahn, S., Garbout, A., Doen, S. H., Mooney, S. J., …Ritz, K. (2018). Soil seal development under simulated rainfall: structural, physical and hydrological dynamics. Journal of Hydrology, 556, https://doi.org/10.1016/j.jhydrol.2017.10.073

This study delivers new insights into rainfall-induced seal formation through a novel approach in the use of X-ray Computed Tomography (CT). Up to now seal and crust thickness have been directly quantified mainly through visual examination of sealed/... Read More about Soil seal development under simulated rainfall: structural, physical and hydrological dynamics.

Roots-eye view: using microdialysis and microCT to non-destructively map root nutrient depletion and accumulation zones (2017)
Journal Article
Brackin, R., Atkinson, B. S., Sturrock, C. J., & Rasmussen, A. (2017). Roots-eye view: using microdialysis and microCT to non-destructively map root nutrient depletion and accumulation zones. Plant, Cell and Environment, 40(12), https://doi.org/10.1111/pce.13072

Improvement in fertiliser use efficiency is a key aspect for achieving sustainable agriculture in order to minimise costs, greenhouse gas emissions and pollution from nutrient runoff. To optimise root architecture for nutrient uptake and efficiency w... Read More about Roots-eye view: using microdialysis and microCT to non-destructively map root nutrient depletion and accumulation zones.

Cell density and airspace patterning in the leaf can be manipulated to increase leaf photosynthetic capacity (2017)
Journal Article
Lehmeier, C., Pajor, R., Lundgren, M. R., Mathers, A., Sloan, J., Bauch, M., …Fleming, A. J. (2017). Cell density and airspace patterning in the leaf can be manipulated to increase leaf photosynthetic capacity. Plant Journal, 92(6), https://doi.org/10.1111/tpj.13727

The pattern of cell division, growth and separation during leaf development determines the pattern and volume of airspace in a leaf. The resulting balance of cellular material and airspace is expected to significantly influence the primary function o... Read More about Cell density and airspace patterning in the leaf can be manipulated to increase leaf photosynthetic capacity.

Shaping 3D root system architecture (2017)
Journal Article
Morris, E. C., Griffiths, M., Golebiowska, A., Mairhofer, S., Burr-Hersey, J., Goh, T., …Bennett, M. J. (2017). Shaping 3D root system architecture. Current Biology, 27(17), R919-R930. https://doi.org/10.1016/j.cub.2017.06.043

Plants are sessile organisms rooted in one place. The soil resources that plants require are often distributed in a highly heterogeneous pattern. To aid foraging, plants have evolved roots whose growth and development are highly responsive to soil si... Read More about Shaping 3D root system architecture.

Quantification of seed-soil contact of sugar beet (Beta vulgaris) using X-ray Computed Tomography (2017)
Journal Article
Sparkes, D., Bussell, J., Blunk, S., Malik, A. H., de Heer, M. I., Ekblad, T., …Mooney, S. J. (2017). Quantification of seed-soil contact of sugar beet (Beta vulgaris) using X-ray Computed Tomography. Plant Methods, 13(1), https://doi.org/10.1186/s13007-017-0220-4

© 2017 The Author(s). Background: Seed-soil contact is important to ensure successful germination, however, there is a paucity of reported studies that have quantified the microstructure at and around this critical interface, mainly due to the opacit... Read More about Quantification of seed-soil contact of sugar beet (Beta vulgaris) using X-ray Computed Tomography.

Computed tomography in veterinary medicine: currently published and tomorrow’s vision (2017)
Book Chapter
Keane, M., Paul, E., Sturrock, C., Rauch, C., & Rutland, C. S. (in press). Computed tomography in veterinary medicine: currently published and tomorrow’s vision. In A. M. Halefoğlu (Ed.), Computed tomography: advanced applications. InTechOpen. https://doi.org/10.5772/intechopen.68556

The utilisation of Computed Tomography (CT) in veterinary practice has been increasing rapidly in line with reduced cost, improved availability and the increase in expertise and technology. This review briefly examines the recent technological advanc... Read More about Computed tomography in veterinary medicine: currently published and tomorrow’s vision.

Quantification of differences in germination behaviour of pelleted and coated sugar beet seeds using X-ray Computed Tomography (X-ray CT) (2017)
Journal Article
Blunk, S., Malik, A. H., de Heer, M. I., Ekblad, T., Fredlund, K., Mooney, S. J., & Sturrock, C. J. (in press). Quantification of differences in germination behaviour of pelleted and coated sugar beet seeds using X-ray Computed Tomography (X-ray CT). Biomedical Physics and Engineering Express, 3(4), https://doi.org/10.1088/2057-1976/aa7c3f

Seed enhancement technologies i.e. priming, pelleting and coating have been extensively9 used throughout the last century to improve crop yield and to reduce losses associated with pest infestation. However, until recently, it has not been possible t... Read More about Quantification of differences in germination behaviour of pelleted and coated sugar beet seeds using X-ray Computed Tomography (X-ray CT).

Root morphology and biomechanical characteristics of high altitude alpine plant species and their potential application in soil stabilization (2017)
Journal Article
Hudek, C., Sturrock, C., Atkinson, B., Stanchi, S., & Freppaz, M. (2017). Root morphology and biomechanical characteristics of high altitude alpine plant species and their potential application in soil stabilization. Ecological Engineering, 109(Part B), https://doi.org/10.1016/j.ecoleng.2017.05.048

Glacial forefields host young, poorly developed soils with highly unstable environmental conditions. Root system contribution to soil stabilization is a well-known phenomenon. Identifying the functional traits and root morphology of pioneer vegetatio... Read More about Root morphology and biomechanical characteristics of high altitude alpine plant species and their potential application in soil stabilization.

Root hydrotropism is controlled via a cortex-specific growth mechanism (2017)
Journal Article
Dietrich, D., Pang, L., Kobayashi, A., Fozard, J. A., Boudolf, V., Bhosale, R., …Bennett, M. J. (2017). Root hydrotropism is controlled via a cortex-specific growth mechanism. Nature Plants, 3(6), Article 17057. https://doi.org/10.1038/nplants.2017.57

Plants can acclimate by using tropisms to link the direction of growth to environmental conditions. Hydrotropism allows roots to forage for water, a process known to depend on abscisic acid (ABA) but whose molecular and cellular basis remains unclear... Read More about Root hydrotropism is controlled via a cortex-specific growth mechanism.

A herbivore tag-and-trace system reveals contact- and density-dependent repellence of a root toxin (2017)
Journal Article
Bont, Z., Arce, C., Huber, M., Huang, W., Mestrot, A., Sturrock, C., & Erb, M. (2017). A herbivore tag-and-trace system reveals contact- and density-dependent repellence of a root toxin. Journal of Chemical Ecology, 43(3), 295-306. https://doi.org/10.1007/s10886-017-0830-3

Foraging behavior of root feeding organisms strongly affects plant-environment-interactions and ecosystem processes. However, the impact of plant chemistry on root herbivore movement in the soil is poorly understood. Here, we apply a simple technique... Read More about A herbivore tag-and-trace system reveals contact- and density-dependent repellence of a root toxin.

Non-destructive determination of floral staging in cereals using X-ray micro computed tomography (µCT) (2017)
Journal Article
Tracy, S. R., Gómez, J. F., Sturrock, C., Wilson, Z. A., & Ferguson, A. (2017). Non-destructive determination of floral staging in cereals using X-ray micro computed tomography (µCT). Plant Methods, 13(1), https://doi.org/10.1186/s13007-017-0162-x

Background Accurate floral staging is required to aid research into pollen and flower development, in particular male development. Pollen development is highly sensitive to stress and is critical for crop yields. Research into male development under... Read More about Non-destructive determination of floral staging in cereals using X-ray micro computed tomography (µCT).

Comparative morphological trade-offs between pre- and post-copulatory sexual selection in Giant hissing cockroaches (Tribe: Gromphadorhini) (2016)
Journal Article
Durrant, K. L., Skicko, I. M., Sturrock, C., & Mowles, S. L. (in press). Comparative morphological trade-offs between pre- and post-copulatory sexual selection in Giant hissing cockroaches (Tribe: Gromphadorhini). Scientific Reports, 6, https://doi.org/10.1038/srep36755

Sperm competition theory predicts that animals face a trade-off between investment in weaponry and investment in ejaculate composition. Within the Madagascan giant hissing cockroaches (Tribe Gromphadorhini) differences in morphology exist that may in... Read More about Comparative morphological trade-offs between pre- and post-copulatory sexual selection in Giant hissing cockroaches (Tribe: Gromphadorhini).

Linking bone development on the caudal aspect of the distal phalanx with lameness during life (2016)
Journal Article
Newsome, R., Green, M. J., Bell, N., Chagunda, M., Mason, C., Rutland, C. S., …Huxley, J. (2016). Linking bone development on the caudal aspect of the distal phalanx with lameness during life. Journal of Dairy Science, 99(6), https://doi.org/10.3168/jds.2015-10202

Claw horn disruption lesions (CHDL; sole hemorrhage, sole ulcer, and white line disease) cause a large proportion of lameness in dairy cattle, yet their etiopathogenesis remains poorly understood. Untreated CHDL may be associated with damage to the i... Read More about Linking bone development on the caudal aspect of the distal phalanx with lameness during life.

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture (2016)
Journal Article
Piñeros, M. A., Larson, B. G., Shaff, J. E., Schneider, D. J., Falcão, A. X., Yuan, L., …Kochian, L. V. (2016). Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture. Journal of Integrative Plant Biology, 58(3), 230-241. https://doi.org/10.1111/jipb.12456

A plant's ability to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, can be strongly influenced by root system architecture (RSA), the three-dimensional distribution of the different root types in the... Read More about Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants: Digital phenotyping of root system architecture.

Quantification of Aluminum-Induced Changes in Wheat Root Architecture by X-ray Microcomputed Tomography (2016)
Journal Article
Lazarevi?, B., Sturrock, C., Poljak, M., & Mooney, S. J. (in press). Quantification of Aluminum-Induced Changes in Wheat Root Architecture by X-ray Microcomputed Tomography. Communications in Soil Science and Plant Analysis, 47(2), 263-274. https://doi.org/10.1080/00103624.2015.1122800

Root architectural traits are of fundamental importance for plant performance, especially under unfavorable soil conditions. This study examined the effect of aluminum (Al) toxicity in different growing media (nutrient solutions and soil) on root arc... Read More about Quantification of Aluminum-Induced Changes in Wheat Root Architecture by X-ray Microcomputed Tomography.

Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images (2015)
Journal Article
Mairhofer, S., Johnson, J., Sturrock, C., Bennett, M. J., Mooney, S. J., & Pridmore, T. P. (2016). Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images. Machine Vision and Applications, 27(5), 721-734. https://doi.org/10.1007/s00138-015-0733-7

We propose a visual object tracking framework for the extraction of multiple interacting plant root systems from three-dimensional X-ray micro computed tomography images of plants grown in soil. Our method is based on a level set framework guided by... Read More about Visual tracking for the recovery of multiple interacting plant root systems from X-ray ?CT images.

Extracting multiple interacting root systems using X-ray microcomputed tomography (2015)
Journal Article
Mairhofer, S., Sturrock, C., Mooney, S. J., Pridmore, T. P., & Bennett, M. J. (2015). Extracting multiple interacting root systems using X-ray microcomputed tomography. Plant Journal, 84(5), 1034-1043. https://doi.org/10.1111/tpj.13047

© 2015 The Authors The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd. Root system interactions and competition for resources are active areas of research that contribute to our understanding of how roots perc... Read More about Extracting multiple interacting root systems using X-ray microcomputed tomography.

Claw length recommendations for dairy cow foot trimming (2015)
Journal Article
Archer, S. C., Newsome, R., Dibble, H., Sturrock, C., Chagunda, M., Mason, C., & Huxley, J. (2015). Claw length recommendations for dairy cow foot trimming. Veterinary Record, https://doi.org/10.1136/vr.103197

The aim was to describe variation in length of the dorsal hoof wall in contact with the dermis for cows on a single farm, and hence, derive minimum appropriate claw lengths for routine foot trimming. The hind feet of 68 Holstein-Friesian dairy cows w... Read More about Claw length recommendations for dairy cow foot trimming.

Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR (2015)
Journal Article
Sturrock, C., Woodhall, J., Brown, M., Walker, C., Mooney, S. J., & Ray, R. V. (in press). Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR. Frontiers in Plant Science, 6, https://doi.org/10.3389/fpls.2015.00461

Rhizoctonia solani is a plant pathogenic fungus that causes significant establishment and yield losses to several important food crops globally. This is the first application of high resolution X-ray micro Computed Tomography (X-ray μCT) and real-tim... Read More about Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR.

Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling (2015)
Journal Article
Tracy, S. R., Daly, K. R., Sturrock, C. J., Mooney, S. J., Crout, N. M., & Roose, T. (2015). Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling. Water Resources Research, 51(2), 1006-1022. https://doi.org/10.1002/2014WR016020

We demonstrate the application of a high-resolution X-ray Computed Tomography (CT) method to quantify water distribution in soil pores under successive reductive drying. We focus on the wet end of the water release characteristic (WRC) (0 to ?75 kPa)... Read More about Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling.

Assessing the effect of fibre extraction processes on the strength of flax fibre reinforcement (2014)
Journal Article
Zeng, X., Mooney, S., & Sturrock, C. J. (2015). Assessing the effect of fibre extraction processes on the strength of flax fibre reinforcement. Composites Part A: Applied Science and Manufacturing, 70, 1-7. https://doi.org/10.1016/j.compositesa.2014.12.004

A number of factors impede the direct translation of fibre properties from plant crop species to natural fibre composites. Commercially available fibre extraction processes introduce defects and degrade the mechanical properties of fibres. This study... Read More about Assessing the effect of fibre extraction processes on the strength of flax fibre reinforcement.

On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images (2014)
Journal Article
Mairhofer, S., Sturrock, C., Wells, D. M., Bennett, M. J., Mooney, S. J., & Pridmore, T. P. (2014). On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images. Functional Plant Biology, 42(5), 460-470. https://doi.org/10.1071/FP14071

© CSIRO 2015. X-ray microcomputed tomography (μCT) allows nondestructive visualisation of plant root systems within their soil environment and thus offers an alternative to the commonly used destructive methodologies for the examination of plant root... Read More about On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images.

Branching out in roots: uncovering form, function, and regulation (2014)
Journal Article
Atkinson, J. A., Rasmussen, A., Traini, R., Voss, U., Sturrock, C., Mooney, S. J., …Bennett, M. J. (2014). Branching out in roots: uncovering form, function, and regulation. Plant Physiology, 166(2), 538-550. https://doi.org/10.1104/pp.114.245423

Root branching is critical for plants to secure anchorage and ensure the supply of water, minerals, and nutrients. To date, research on root branching has focused on lateral root development in young seedlings. However, many other programs of postemb... Read More about Branching out in roots: uncovering form, function, and regulation.

Maternal protein-energy malnutrition during early pregnancy in sheep impacts the fetal ornithine cycle to reduce fetal kidney microvascular development (2014)
Journal Article
Dunford, L. J., Sinclair, K. D., Kwong, W. Y., Sturrock, C., Clifford, B. L., Giles, T. C., & Gardner, D. S. (2014). Maternal protein-energy malnutrition during early pregnancy in sheep impacts the fetal ornithine cycle to reduce fetal kidney microvascular development. FASEB Journal, 28(11), 4880-4892. https://doi.org/10.1096/fj.14-255364

This paper identifies a common nutritional pathway relating maternal through to fetal protein-energy malnutrition (PEM) and compromised fetal kidney development. Thirty-one twin-bearing sheep were fed either a control (n=15) or low-protein diet (n=16... Read More about Maternal protein-energy malnutrition during early pregnancy in sheep impacts the fetal ornithine cycle to reduce fetal kidney microvascular development.

Plant roots use a patterning mechanism to position lateral root branches toward available water (2014)
Journal Article
Bao, Y., Aggarwal, P., Robbins II, N. E., Sturrock, C., Thompson, M. C., Qi Tan, H., …Dinneny, J. R. (2014). Plant roots use a patterning mechanism to position lateral root branches toward available water. Proceedings of the National Academy of Sciences, 111(25), 9319-9324. https://doi.org/10.1073/pnas.1400966111

The architecture of the branched root system of plants is a major determinant of vigor. Water availability is known to impact root physiology and growth; however, the spatial scale at which this stimulus influences root architecture is poorly underst... Read More about Plant roots use a patterning mechanism to position lateral root branches toward available water.

To what extent can zero tillage lead to a reduction in greenhouse gas emissions from temperate soils? (2014)
Journal Article
Mangalassery, S., Sjögersten, S., Sparkes, D. L., Sturrock, C., Craigon, J., & Mooney, S. J. (2015). To what extent can zero tillage lead to a reduction in greenhouse gas emissions from temperate soils?. Scientific Reports, 4(1), Article 4586. https://doi.org/10.1038/srep04586

Soil tillage practices have a profound influence on the physical properties of soil and the greenhouse gas (GHG) balance. However there have been very few integrated studies on the emission of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2... Read More about To what extent can zero tillage lead to a reduction in greenhouse gas emissions from temperate soils?.

Quantifying the impact of microbes on soil structural development and behaviour in wet soils (2014)
Journal Article
Helliwell, J., Miller, A., Whalley, W., Mooney, S., & Sturrock, C. (2014). Quantifying the impact of microbes on soil structural development and behaviour in wet soils. Soil Biology and Biochemistry, 74, https://doi.org/10.1016/j.soilbio.2014.03.009

There is evidence that microbial populations play an important role in altering soil pore geometry, but a full understanding of how this affects subsequent soil behaviour and function is still unclear. In particular the role of microorganisms in soil... Read More about Quantifying the impact of microbes on soil structural development and behaviour in wet soils.

Computed tomography analysis of guinea pig bone: architecture, bone thickness and dimensions throughout development. (2014)
Journal Article
Witkowska, A., Alibhai, A., Hughes, C., Price, J., Klisch, K., Sturrock, C., & Rutland, C. S. (2014). Computed tomography analysis of guinea pig bone: architecture, bone thickness and dimensions throughout development. PeerJ, 2, Article e615. https://doi.org/10.7717/peerj.615

The domestic guinea pig, Cavia aperea f. porcellus, belongs to the Caviidae family of rodents. It is an important species as a pet, a source of food and in medical research. Adult weight is achieved at 8-12 months and life expectancy is ?5-6 years. O... Read More about Computed tomography analysis of guinea pig bone: architecture, bone thickness and dimensions throughout development..

Effects of X-ray dose on rhizosphere studies using X-ray computed tomography (2013)
Journal Article
Zappala, S., Helliwell, J. R., Tracy, S., Mairhofer, S., Sturrock, C., Pridmore, T., …Mooney, S. J. (2013). Effects of X-ray dose on rhizosphere studies using X-ray computed tomography. PLoS ONE, 8(6), Article e67250. https://doi.org/10.1371/journal.pone.0067250

X-ray Computed Tomography (CT) is a non-destructive imaging technique originally designed for diagnostic medicine, which was adopted for rhizosphere and soil science applications in the early 1980s. X-ray CT enables researchers to simultaneously visu... Read More about Effects of X-ray dose on rhizosphere studies using X-ray computed tomography.

Recovering complete plant root system architectures from soil via X-ray ?-computed tomography (2013)
Journal Article
Mairhofer, S., Zappala, S., Tracy, S., Sturrock, C., Bennett, M. J., Mooney, S. J., & Pridmore, T. (2013). Recovering complete plant root system architectures from soil via X-ray ?-computed tomography. Plant Methods, 9, Article 8. https://doi.org/10.1186/1746-4811-9-8

Background: X-ray micro-Computed Tomography (μCT) offers the ability to visualise the three-dimensional structure of plant roots growing in their natural environment – soil. Recovery of root architecture descriptions from X-ray CT data is, however,... Read More about Recovering complete plant root system architectures from soil via X-ray ?-computed tomography.

Impact of flavour solvent on biscuit micro-structure as measured by X-ray micro-computed tomography and the distribution of vanillin and HMF (HPLC) (2012)
Journal Article
Yang, N., Fisk, I. D., Linforth, R. S., Brown, K., Walsh, S., Mooney, S. J., …Hort, J. (2012). Impact of flavour solvent on biscuit micro-structure as measured by X-ray micro-computed tomography and the distribution of vanillin and HMF (HPLC). European Food Research and Technology, 235(6), https://doi.org/10.1007/s00217-012-1837-1

The influence of flavour solvent, propylene glycol (PG) and triacetin (TA), was investigated on the micro-structure (as measured by X-ray micro-Computed Tomography, X-ray ?CT) and aroma compound distribution (as measured by HPLC) within shortcake bis... Read More about Impact of flavour solvent on biscuit micro-structure as measured by X-ray micro-computed tomography and the distribution of vanillin and HMF (HPLC).