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TopoGSA: network topological gene set analysis

Glaab, Enrico; Baudot, Anais; Krasnogor, Natalio; Valencia, Alfonso

Authors

Enrico Glaab

Anais Baudot

Natalio Krasnogor

Alfonso Valencia



Abstract

TopoGSA (Topology-based Gene Set Analysis) is a web-application dedicated to the computation and visualization of network topological properties for gene and protein sets in molecular interaction networks. Different topological characteristics, such as the centrality of nodes in the network or their tendency to form clusters, can be computed and compared with those of known cellular pathways and processes.

Journal Article Type Article
Publication Date Mar 24, 2010
Journal Bioinformatics
Print ISSN 1367-4803
Electronic ISSN 1367-4803
Publisher Oxford University Press (OUP)
Peer Reviewed Peer Reviewed
Volume 26
Issue 9
APA6 Citation Glaab, E., Baudot, A., Krasnogor, N., & Valencia, A. (2010). TopoGSA: network topological gene set analysis. Bioinformatics, 26(9), doi:10.1093/bioinformatics/btq131
DOI https://doi.org/10.1093/bioinformatics/btq131
Publisher URL http://bioinformatics.oxfordjournals.org/content/26/9/1271.full
Copyright Statement Copyright information regarding this work can be found at the following address: http://eprints.nottingh.../end_user_agreement.pdf
Additional Information This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version: Glaab, E., Baudot, A., Krasnogor, N.& Valencia, A., TopoGSA: network topological gene set analysis, Bioinformatics (2010) 26 (9): 1271-1272.
doi: 10.1093/bioinformatics/btq131 is available online at: http://bioinformatics.o.../content/26/9/1271.full

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Copyright Statement
Copyright information regarding this work can be found at the following address: http://eprints.nottingham.ac.uk/end_user_agreement.pdf





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