TopoGSA: network topological gene set analysis

Glaab, Enrico; Baudot, Anais; Krasnogor, Natalio; Valencia, Alfonso

Abstract

TopoGSA (Topology-based Gene Set Analysis) is a web-application dedicated to the computation and visualization of network topological properties for gene and protein sets in molecular interaction networks. Different topological characteristics, such as the centrality of nodes in the network or their tendency to form clusters, can be computed and compared with those of known cellular pathways and processes.

Citation

Glaab, E., Baudot, A., Krasnogor, N., & Valencia, A. (2010). TopoGSA: network topological gene set analysis. Bioinformatics, 26(9), https://doi.org/10.1093/bioinformatics/btq131

• Journal Article Type: Article
• Publication Date: Mar 24, 2010
• Deposit Date: Jul 28, 2012
• Publicly Available Date: Jul 28, 2012
• Journal: Bioinformatics
• Print ISSN: 1367-4803
• Electronic ISSN: 1367-4803
• Publisher: Oxford University Press
• Peer Reviewed: Peer Reviewed
• Volume: 26
• Issue: 9
• DOI: https://doi.org/10.1093/bioinformatics/btq131
• Public URL: https://nottingham-repository.worktribe.com/output/706075
• Publisher URL: http://bioinformatics.oxfordjournals.org/content/26/9/1271.full
• Additional Information: This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version: Glaab, E., Baudot, A., Krasnogor, N.& Valencia, A., TopoGSA: network topological gene set analysis, Bioinformatics (2010) 26 (9): 1271-1272. ; doi: 10.1093/bioinformatics/btq131 is available online at: http://bioinformatics.oxfordjournals.org/content/26/9/1271.full