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A case of mistaken identity – reappraisal of the species of canid and felid hookworms (Ancylostoma) present in Australia and India
Journal Article
Traub, R. J., Hobbs, R., Adams, P., Behnke, J. M., Harris, P. D., & Thompson, R. A case of mistaken identity – reappraisal of the species of canid and felid hookworms (Ancylostoma) present in Australia and India. Parasitology, 134(1), https://doi.org/10.1017/S0031182006001211

This study serves to clarify the current status of canid and felid Ancylostoma species present in Australia. The morphological identification of A. ceylanicum from cats for the first time in Townsville, Australia, appears to be in error, together wit... Read More about A case of mistaken identity – reappraisal of the species of canid and felid hookworms (Ancylostoma) present in Australia and India.

Asymptotic analysis of combined breather-kink modes in a Fermi-Pasta-Ulam chain
Journal Article
Butt, I. A., & Wattis, J. A. Asymptotic analysis of combined breather-kink modes in a Fermi-Pasta-Ulam chain. Physica D: Nonlinear Phenomena, 231,

We find approximations to travelling breather solutions of the one-dimensional Fermi-Pasta-Ulam (FPU) lattice. Both bright breather and dark breather solutions are found. We find that the existence of localised (bright) solutions depends upon the... Read More about Asymptotic analysis of combined breather-kink modes in a Fermi-Pasta-Ulam chain.

Discrete breathers in a two-dimensional hexagonal Fermi-Pasta-Ulam lattice
Journal Article
Butt, I. A., & Wattis, J. A. Discrete breathers in a two-dimensional hexagonal Fermi-Pasta-Ulam lattice

We consider a two-dimensional Fermi-Pasta-Ulam (FPU) lattice with hexagonal symmetry. Using asymptotic methods based on small amplitude ansatz, at third order we obtain a eduction to a cubic nonlinear Schr{\"o}dinger equation (NLS) for the breathe... Read More about Discrete breathers in a two-dimensional hexagonal Fermi-Pasta-Ulam lattice.

OriDB: a DNA replication origin database
Journal Article
Nieduszynski, C. A., Hiraga, S., Ak, P., Benham, C. J., & Donaldson, A. D. OriDB: a DNA replication origin database. Nucleic Acids Research, 35(Databa), Article D40-D46. https://doi.org/10.1093/nar/gkl758

Replication of eukaryotic chromosomes initiates at multiple sites called replication origins. Replication origins are best understood in the budding yeast Saccharomyces cerevisiae, where several complementary studies have mapped their locations genom... Read More about OriDB: a DNA replication origin database.

Religious fundamentalism and utopianism in the 21st century
Journal Article
Sargisson, L. (2007). Religious fundamentalism and utopianism in the 21st century. Manuscript submitted for publication

Why is it so difficult to respond to religious fundamentalism from within a liberal paradigm? This paper explores a core problem within religious fundamentalism, stemming from its relationship to the phenomenon of utopianism. This is a complex relati... Read More about Religious fundamentalism and utopianism in the 21st century.

Doctors' thinking about the system as a threat to patient safety
Journal Article
Waring, J. Doctors' thinking about the system as a threat to patient safety. Health, 11(1), https://doi.org/10.1177/1363459307070801

‘Systems thinking’ is an important feature of the emerging ‘patient safety’ agenda. As a key component of a ‘safety culture’, it encourages clinicians to look past individual error to recognise the latent factors that threaten safety. This paper inv... Read More about Doctors' thinking about the system as a threat to patient safety.

Motif detection inspired by immune memory
Journal Article
Wilson, W., Birkin, P., & Aickelin, U. Motif detection inspired by immune memory. Lecture Notes in Artificial Intelligence, 4628, https://doi.org/10.1007/978-3-540-73922-7_24

The search for patterns or motifs in data represents an area of key interest to many researchers. In this paper we present the Motif Tracking Algorithm, a novel immune inspired pattern identification tool that is able to identify variable length unkn... Read More about Motif detection inspired by immune memory.

Toward blueprints for network architecture, biophysical dynamics, and signal transduction
Journal Article
Coombes, S., Doiron, B., Josic, K., & Shea-Brown, E. (2006). Toward blueprints for network architecture, biophysical dynamics, and signal transduction

We review mathematical aspects of biophysical dynamics, signal transduction and network architecture that have been used to uncover functionally significant relations between the dynamics of single neurons and the networks they compose. We focus on... Read More about Toward blueprints for network architecture, biophysical dynamics, and signal transduction.

Conflicts of interest in dermatology
Journal Article
Williams, H. C., Naldi, L., Paul, C., Vahlquist, A., Schroter, S., & Jobling, R. Conflicts of interest in dermatology. Acta Dermato-Venereologica, 86(6), https://doi.org/10.2340/00015555-0191

Conflicts of interest exist in dermatology when professional judgement concerning a primary interest, such as research validity, may be influenced by a secondary interest, such as financial gain from a for-profit organization. Conflict of interest... Read More about Conflicts of interest in dermatology.

Existence and wandering of bumps in a spiking neural network model
Journal Article
Chow, C., & Coombes, S. (2006). Existence and wandering of bumps in a spiking neural network model

We study spatially localized states of a spiking neuronal network populated by a pulse coupled phase oscillator known as the lighthouse model. We show that in the limit of slow synaptic interactions in the continuum limit the dynamics reduce to tho... Read More about Existence and wandering of bumps in a spiking neural network model.

Discrete breathers in a two-dimensional Fermi-Pasta-Ulam lattice
Journal Article
Butt, I. A., & Wattis, J. A. Discrete breathers in a two-dimensional Fermi-Pasta-Ulam lattice. Journal of Physics A: Mathematical and General, 39,

Using asymptotic methods, we investigate whether discrete breathers are supported by a two-dimensional Fermi-Pasta-Ulam lattice. A scalar (one-component) two-dimensional Fermi-Pasta-Ulam lattice is shown to model the charge stored within an electr... Read More about Discrete breathers in a two-dimensional Fermi-Pasta-Ulam lattice.

Coarse-graining and renormalisation group methods for the elucidation of the kinetics of complex nucleation and growth processes
Journal Article
Coveney, P. V., & Wattis, J. A. Coarse-graining and renormalisation group methods for the elucidation of the kinetics of complex nucleation and growth processes. Molecular Physics, 104,

We review our work on generalisations of the Becker-Doring model of cluster-formation as applied to nucleation theory, polymer growth kinetics, and the formation of upramolecular structures in colloidal chemistry. One valuable tool in analysing math... Read More about Coarse-graining and renormalisation group methods for the elucidation of the kinetics of complex nucleation and growth processes.

Discontinuous Galerkin Methods for Advection-Diffusion-Reaction Problems on Anisotropically Refined Meshes
Journal Article
Georgoulis, E. H., Hall, E., & Houston, P. (2006). Discontinuous Galerkin Methods for Advection-Diffusion-Reaction Problems on Anisotropically Refined Meshes

In this paper we consider the a posteriori and a priori error analysis of discontinuous Galerkin interior penalty methods for second-order partial differential equations with nonnegative characteristic form on anisotropically refined computational me... Read More about Discontinuous Galerkin Methods for Advection-Diffusion-Reaction Problems on Anisotropically Refined Meshes.

Discontinuous Galerkin Methods on hp-Anisotropic Meshes I: A Priori Error Analysis
Journal Article
Georgoulis, E. H., Hall, E., & Houston, P. (2006). Discontinuous Galerkin Methods on hp-Anisotropic Meshes I: A Priori Error Analysis

We consider the a priori error analysis of hp-version interior penalty discontinuous Galerkin methods for second-order partial differential equations with nonnegative characteristic form under weak assumptions on the mesh design and the local finite... Read More about Discontinuous Galerkin Methods on hp-Anisotropic Meshes I: A Priori Error Analysis.