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All Outputs (34)

Word and Multiword Processing (2022)
Book Chapter
Conklin, K., & Thul, R. (2022). Word and Multiword Processing. In A. Godfroid, & H. Hopp (Eds.), The Routledge Handbook of Second Language Acquisition and Psycholinguistics (203-215). Routledge. https://doi.org/10.4324/9781003018872-20

When we encounter linguistic input, both spoken and written, we need to identify words and multiword sequences (e.g., “spill the beans” meaning “to reveal a secret”), ascertain their meaning, and integrate them into our unfolding understanding of a s... Read More about Word and Multiword Processing.

Using GAMMs to model trial-by-trial fluctuations in experimental data: More risks but hardly any benefit (2021)
Journal Article
Thul, R., Conklin, K., & Barr, D. J. (2021). Using GAMMs to model trial-by-trial fluctuations in experimental data: More risks but hardly any benefit. Journal of Memory and Language, 120, Article 104247. https://doi.org/10.1016/j.jml.2021.104247

Data from each subject in a repeated-measures experiment forms a time series , which may include trial-by-trial fluctuations arising from human factors such as practice or fatigue. Concerns about the statistical implications of such effects have incr... Read More about Using GAMMs to model trial-by-trial fluctuations in experimental data: More risks but hardly any benefit.

A statistical view on calcium oscillations (2019)
Journal Article
Powell, J., Falcke, M., Skupin, A., Bellamy, T., Kypraios, T., & Thul, R. (2019). A statistical view on calcium oscillations. Advances in Experimental Medicine and Biology, 1131, 799-826. https://doi.org/10.1007/978-3-030-12457-1_32

Transient rises and falls of the intracellular calcium concentration have been observed in numerous cell types and under a plethora of conditions. There is now a growing body of evidence that these whole-cell calcium oscillations are stochastic, whic... Read More about A statistical view on calcium oscillations.

On the phase space structure of IP3 induced Ca2+ signalling and concepts for predictive modeling (2018)
Journal Article
Falcke, M., Moein, M., Tilunaite, A., Thul, R., & Skupin, A. (2018). On the phase space structure of IP3 induced Ca2+ signalling and concepts for predictive modeling. Chaos, 28(4), Article 045115. https://doi.org/10.1063/1.5021073

The correspondence between mathematical structures and experimental systems is the basis of the generalizability of results found with specific systems, and is the basis of the predictive power of theoretical physics. While physicists have confidence... Read More about On the phase space structure of IP3 induced Ca2+ signalling and concepts for predictive modeling.

Evolution of moments and correlations in non-renewal escape-time processes (2017)
Journal Article
Braun, W., Thul, R., & Longtin, A. (in press). Evolution of moments and correlations in non-renewal escape-time processes. Physical Review E, 95, https://doi.org/10.1103/PhysRevE.95.052127

The theoretical description of non-renewal stochastic systems is a challenge. Analytical results are often not available or can only be obtained under strong conditions, limiting their applicability. Also, numerical results have mostly been obtained... Read More about Evolution of moments and correlations in non-renewal escape-time processes.

Sign changes as a universal concept in first-passage-time calculations (2017)
Journal Article
Braun, W., & Thul, R. (2017). Sign changes as a universal concept in first-passage-time calculations. Physical Review E, 95(12114), https://doi.org/10.1103/PhysRevE.95.012114

First-passage-time problems are ubiquitous across many fields of study including transport processes in semiconductors and biological synapses, evolutionary game theory and percolation. Despite their prominence, first-passage-time calculations have p... Read More about Sign changes as a universal concept in first-passage-time calculations.

Neural field models with threshold noise (2016)
Journal Article
Thul, R., Coombes, S., & Laing, C. R. (2016). Neural field models with threshold noise. Journal of Mathematical Neuroscience, 6, Article 3. https://doi.org/10.1186/s13408-016-0035-z

The original neural field model of Wilson and Cowan is often interpreted as the averaged behaviour of a network of switch like neural elements with a distribution of switch thresholds, giving rise to the classic sigmoidal population firing-rate funct... Read More about Neural field models with threshold noise.

Modelling cell cycle synchronisation in networks of coupled radial glial cells (2015)
Journal Article
Barrack, D., Thul, R., & Owen, M. R. (2015). Modelling cell cycle synchronisation in networks of coupled radial glial cells. Journal of Theoretical Biology, 377, https://doi.org/10.1016/j.jtbi.2015.04.013

Radial glial cells play a crucial role in the embryonic mammalian brain. Their proliferation is thought to be controlled, in part, by ATP mediated calcium signals. It has been hypothesised that these signals act to locally synchronise cell cycles, so... Read More about Modelling cell cycle synchronisation in networks of coupled radial glial cells.

Unifying principles of calcium wave propagation: insights from a three-dimensional model for atrial myocytes (2015)
Journal Article
Thul, R., Rietdorf, K., Bootman, M. D., & Coombes, S. (2015). Unifying principles of calcium wave propagation: insights from a three-dimensional model for atrial myocytes. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1853(9), https://doi.org/10.1016/j.bbamcr.2015.02.019

Atrial myocytes in a number of species lack transverse tubules. As a consequence the intracellular calcium signals occurring during each heartbeat exhibit complex spatio-temporal dynamics. These calcium patterns arise from saltatory calcium waves tha... Read More about Unifying principles of calcium wave propagation: insights from a three-dimensional model for atrial myocytes.

Cannabinoid-mediated short-term plasticity in hippocampus (2014)
Journal Article
Zachariou, M., & Thul, R. (2014). Cannabinoid-mediated short-term plasticity in hippocampus. Journal of Computational Neuroscience, 37(3), https://doi.org/10.1007/s10827-014-0518-4

Endocannabinoids modulate both excitatory and inhibitory neurotransmission in hippocampus via activation of pre-synaptic cannabinoid receptors. Here, we present a model for cannabinoid mediated short-term depression of excitation (DSE) based on our r... Read More about Cannabinoid-mediated short-term plasticity in hippocampus.

Time to blip – stochastic simulation of single channel opening (2014)
Journal Article
Thul, R. (2014). Time to blip – stochastic simulation of single channel opening. Cold Spring Harbor Protocols, https://doi.org/10.1101/pdb.prot073239

The stochastic dynamics of the inositol-1,4,5-trisphosphate (IP3) receptor (IP3R) is key to understanding a wide range of observed calcium (Ca2+) signals (Falcke 2004). The stochastic nature results from the constant binding and unbinding of Ca2+ and... Read More about Time to blip – stochastic simulation of single channel opening.

Oscillations in a point models of the intracellular Ca2+ concentration (2014)
Journal Article
Thul, R. (2014). Oscillations in a point models of the intracellular Ca2+ concentration. Cold Spring Harbor Protocols, https://doi.org/10.1101/pdb.prot073221

Oscillations in the intracellular calcium (Ca2+) concentration form one of the main pathways by which cells translate external stimuli into physiological responses (Thul et al. 2008; Dupont et al. 2011; Parekh 2011). The mechanisms that underlie the... Read More about Oscillations in a point models of the intracellular Ca2+ concentration.

Translating intracellular calcium signaling into models (2014)
Journal Article
Thul, R. (2014). Translating intracellular calcium signaling into models. Cold Spring Harbor Protocols, https://doi.org/10.1101/pdb.top066266

The rich experimental data on intracellular calcium has put theoreticians in an ideal position to derive models of intracellular calcium signaling. Over the last 25 years, a large number of modeling frameworks have been suggested. Here, I will review... Read More about Translating intracellular calcium signaling into models.

Modelling the coupling between intracellular calcium release and the cell cycle during cortical brain development (2014)
Journal Article
Barrack, D., Thul, R., & Owen, M. R. (2014). Modelling the coupling between intracellular calcium release and the cell cycle during cortical brain development. Journal of Theoretical Biology, 347, https://doi.org/10.1016/j.jtbi.2014.01.004

Most neocortical neurons formed during embryonic brain development arise from radial glial cells which communicate, in part, via ATP mediated calcium signals. Although the intercellular signalling mechanisms that regulate radial glia proliferation ar... Read More about Modelling the coupling between intracellular calcium release and the cell cycle during cortical brain development.

Persistence of pro-arrhythmic spatio-temporal calcium patterns in atrial myocytes: a computational study of ping waves (2012)
Journal Article
Thul, R., Coombes, S., & Bootman, M. D. (2012). Persistence of pro-arrhythmic spatio-temporal calcium patterns in atrial myocytes: a computational study of ping waves. Frontiers in Physiology, 3, Article 279. https://doi.org/10.3389/fphys.2012.00279

Clusters of ryanodine receptors within atrial myocytes are confined to spatially separated layers. In many species, these layers are not juxtaposed by invaginations of the plasma membrane (transverse tubules; 'T-tubules'), so that calcium-induced-cal... Read More about Persistence of pro-arrhythmic spatio-temporal calcium patterns in atrial myocytes: a computational study of ping waves.

Neuronal spike-train responses in the presence of threshold noise (2012)
Journal Article
Coombes, S., Thul, R., Laudanski, J., Palmer, A., & Sumner, C. (in press). Neuronal spike-train responses in the presence of threshold noise. Frontiers in Life Science, 5(3-4), https://doi.org/10.1080/21553769.2011.556016

The variability of neuronal firing has been an intense topic of study for many years. From a modelling perspective it has often been studied in conductance based spiking models with the use of additive or multiplicative noise terms to represent chan... Read More about Neuronal spike-train responses in the presence of threshold noise.

Subcellular calcium dynamics in a whole-cell model of an atrial myocyte (2012)
Journal Article
Thul, R., Coombes, S., Roderick, H. L., & Bootman, M. D. (2012). Subcellular calcium dynamics in a whole-cell model of an atrial myocyte. Proceedings of the National Academy of Sciences, 109(6), 2150-2155. https://doi.org/10.1073/pnas.1115855109

In this study, we present an innovative mathematical modeling approach that allows detailed characterization of Ca 2+ movement within the three-dimensional volume of an atrial myocyte. Essential aspects of the model are the geometrically realistic re... Read More about Subcellular calcium dynamics in a whole-cell model of an atrial myocyte.

Fundamental properties of Ca²⁺ signals (2011)
Journal Article
Thurley, K., Skupin, A., Thul, R., & Falcke, M. (2011). Fundamental properties of Ca²⁺ signals. BBA - General Subjects, 1820(8), https://doi.org/10.1016/j.bbagen.2011.10.007

Background Ca²⁺ is a ubiquitous and versatile second messenger that transmits information through changes of the cytosolic Ca²⁺ concentration. Recent investigations changed basic ideas on the dynamic character of Ca²⁺ signals and challenge tradition... Read More about Fundamental properties of Ca²⁺ signals.

Nonsmooth dynamics in spiking neuron models (2011)
Journal Article
Coombes, S., Thul, R., & Wedgwood, K. C. (2012). Nonsmooth dynamics in spiking neuron models. Physica D: Nonlinear Phenomena, 241(22), https://doi.org/10.1016/j.physd.2011.05.012

Large scale studies of spiking neural networks are a key part of modern approaches to understanding the dynamics of biological neural tissue. One approach in computational neuroscience has been to consider the detailed electrophysiological propertie... Read More about Nonsmooth dynamics in spiking neuron models.