Beyond Point Charges: Dynamic Polarization from Neural Net Predicted Multipole Moments

Darley, Michael G.; Handley, Chris M.; Popelier, Paul L. A.

Abstract

Intramolecular polarization is the change to the electron density of a given atom upon variation in the positions of the neighboring atoms. We express the electron density in terms of multipole moments. Using glycine and N-methylacetamide (NMA) as pilot systems, we show that neural networks can capture the change in electron density due to polarization. After training, modestly sized neural networks successfully predict the atomic multipole moments from the nuclear positions of all atoms in the molecule. Accurate electrostatic energies between two atoms can be then obtained via a multipole expansion, inclusive of polarization effects. As a result polarization is successfully modeled at short-range and without an explicit polarizability tensor. This approach puts charge transfer and multipolar polarization on a common footing. The polarization procedure is formulated within the context of quantum chemical topology (QCT). Nonbonded atom−atom interactions in glycine cover an energy range of 948 kJ mol−1, with an average energy difference between true and predicted energy of 0.2 kJ mol−1, the largest difference being just under 1 kJ mol−1. Very similar energy differences are found for NMA, which spans a range of 281 kJ mol−1. The current proof-of-concept enables the construction of a new protein force field that incorporates electron density fragments that dynamically respond to their fluctuating environment.

Citation

Darley, M. G., Handley, C. M., & Popelier, P. L. A. (2008). Beyond Point Charges: Dynamic Polarization from Neural Net Predicted Multipole Moments. Journal of Chemical Theory and Computation, 4(9), 1435-1448. https://doi.org/10.1021/ct800166r

• Journal Article Type: Article
• Acceptance Date: May 15, 2008
• Online Publication Date: Aug 7, 2008
• Publication Date: Sep 9, 2008
• Deposit Date: Aug 13, 2020
• Journal: Journal of Chemical Theory and Computation
• Print ISSN: 1549-9618
• Electronic ISSN: 1549-9626
• Publisher: American Chemical Society
• Peer Reviewed: Peer Reviewed
• Volume: 4
• Issue: 9
• Pages: 1435-1448
• DOI: https://doi.org/10.1021/ct800166r
• Keywords: Physical and Theoretical Chemistry; Computer Science Applications
• Public URL: https://nottingham-repository.worktribe.com/output/4830484
• Publisher URL: https://pubs.acs.org/doi/10.1021/ct800166r