Computational investigation of aphid odorant receptor structure and binding function

Sims, Cassie; Withall, David M.; Oldham, Neil; Stockman, Robert; Birkett, Michael

Abstract

Odorant receptors (OR) play a critical role in signal transduction and olfactory recognition in insects. Unfortunately, insect ORs are difficult to express and purify, and limited structural data are available. Computational methods were used to predict models for aphid ORs, and binding interactions with aphid pheromones and other semiochemicals were investigated. Previously functionally characterised ORs from the pea aphid, Acyrthosiphon pisum, ApisOR4 and ApisOR5, were screened against functional ligands. ApisOR5 had a defined binding site, and had predicted interactions with the aphid alarm pheromone, (E)-β-farnesene. ApisOR4 had multiple distinct binding sites and showed broad tuning to multiple odorants. Screening of six other highly conserved ORs showed some interactions and potential enantiomeric discrimination between the aphid sex pheromone components (4aS,7S,7aR)-nepetalactone and (1R,4aS,7S,7aR)-nepetalactol. These results indicate that specific binding sites may be more critical to understanding olfactory activity of ligands and ORs than kinetic data, and greater knowledge of the method of action of ORs is required.

Citation

Sims, C., Withall, D. M., Oldham, N., Stockman, R., & Birkett, M. (2023). Computational investigation of aphid odorant receptor structure and binding function. Journal of Biomolecular Structure and Dynamics, 41(8), 3647-3658. https://doi.org/10.1080/07391102.2022.2053743

• Journal Article Type: Article
• Acceptance Date: Mar 9, 2022
• Online Publication Date: Mar 30, 2022
• Publication Date: 2023
• Deposit Date: May 17, 2022
• Journal: Journal of Biomolecular Structure and Dynamics
• Print ISSN: 0739-1102
• Electronic ISSN: 1538-0254
• Publisher: Taylor and Francis
• Peer Reviewed: Peer Reviewed
• Volume: 41
• Issue: 8
• Pages: 3647-3658
• DOI: https://doi.org/10.1080/07391102.2022.2053743
• Keywords: Molecular Biology; General Medicine; Structural Biology
• Public URL: https://nottingham-repository.worktribe.com/output/7710517
• Publisher URL: https://www.tandfonline.com/doi/abs/10.1080/07391102.2022.2053743