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Bayesian Calibration of Electrophysiology Models Using Restitution Curve Emulators

Coveney, Sam; Corrado, Cesare; Oakley, Jeremy E.; Wilkinson, Richard D.; Niederer, Steven A.; Clayton, Richard H.

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Authors

Sam Coveney

Cesare Corrado

Jeremy E. Oakley

Steven A. Niederer

Richard H. Clayton



Contributors

Abstract

Calibration of cardiac electrophysiology models is a fundamental aspect of model personalization for predicting the outcomes of cardiac therapies, simulation testing of device performance for a range of phenotypes, and for fundamental research into cardiac function. Restitution curves provide information on tissue function and can be measured using clinically feasible measurement protocols. We introduce novel “restitution curve emulators” as probabilistic models for performing model exploration, sensitivity analysis, and Bayesian calibration to noisy data. These emulators are built by decomposing restitution curves using principal component analysis and modeling the resulting coordinates with respect to model parameters using Gaussian processes. Restitution curve emulators can be used to study parameter identifiability via sensitivity analysis of restitution curve components and rapid inference of the posterior distribution of model parameters given noisy measurements. Posterior uncertainty about parameters is critical for making predictions from calibrated models, since many parameter settings can be consistent with measured data and yet produce very different model behaviors under conditions not effectively probed by the measurement protocols. Restitution curve emulators are therefore promising probabilistic tools for calibrating electrophysiology models.

Citation

Coveney, S., Corrado, C., Oakley, J. E., Wilkinson, R. D., Niederer, S. A., & Clayton, R. H. (2021). Bayesian Calibration of Electrophysiology Models Using Restitution Curve Emulators. Frontiers in Physiology, 12, Article 693015. https://doi.org/10.3389/fphys.2021.693015

Journal Article Type Article
Acceptance Date Jun 28, 2021
Online Publication Date Jul 22, 2021
Publication Date Jul 22, 2021
Deposit Date Oct 21, 2021
Publicly Available Date Oct 21, 2021
Journal Frontiers in Physiology
Electronic ISSN 1664-042X
Publisher Frontiers Media SA
Peer Reviewed Peer Reviewed
Volume 12
Article Number 693015
DOI https://doi.org/10.3389/fphys.2021.693015
Public URL https://nottingham-repository.worktribe.com/output/6506410
Publisher URL https://www.frontiersin.org/articles/10.3389/fphys.2021.693015/full

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