All Outputs (84)

RootNav: navigating images of complex root architectures (2013)
Journal Article
Pound, M. P., French, A. P., Atkinson, J. A., Wells, D. M., Bennett, M. J., & Pridmore, T. (2013). RootNav: navigating images of complex root architectures. Plant Physiology, 162(4), 1802-1814. https://doi.org/10.1104/pp.113.221531

We present a novel image analysis tool that allows the semiautomated quantification of complex root system architectures in a range of plant species grown and imaged in a variety of ways. The automatic component of RootNav takes a top-down approach,... Read More about RootNav: navigating images of complex root architectures.

Biosensors for phytohormone quantification: challenges, solutions, and opportunities (2013)
Journal Article
Wells, D. M., Laplaze, L., Bennett, M. J., & Vernoux, T. (2013). Biosensors for phytohormone quantification: challenges, solutions, and opportunities. Trends in Plant Science, 18(5), 244-249. https://doi.org/10.1016/j.tplants.2012.12.005

Fluorescent reporters are valuable tools for plant science research, particularly as sensors to monitor biological signals and developmental processes. Such biosensors are particularly useful to monitor the spatial and temporal distribution of small... Read More about Biosensors for phytohormone quantification: challenges, solutions, and opportunities.

Stochastic and deterministic multiscale models for systems biology: An auxin-transport case study (2010)
Journal Article
Twycross, J., Band, L. R., Bennett, M. J., King, J. R., & Krasnogor, N. (2010). Stochastic and deterministic multiscale models for systems biology: An auxin-transport case study. BMC Systems Biology, 4, https://doi.org/10.1186/1752-0509-4-34

Background: Stochastic and asymptotic methods are powerful tools in developing multiscale systems biology models; however, little has been done in this context to compare the efficacy of these methods. The majority of current systems biology modellin... Read More about Stochastic and deterministic multiscale models for systems biology: An auxin-transport case study.

Modular assembly of cell systems biology models using P systems (2009)
Presentation / Conference Contribution
Romero-Campero, F. J., Twycross, J., Camara, M., Bennett, M., Gheorghe, M., & Krasnogor, N. (2008, June). Modular assembly of cell systems biology models using P systems. Presented at Prague International Workshop on Membrane Computing, Prague, Czech Republic

In this paper we propose an extension of a systems/synthetic biology modelling framework based on P systems that explicitly includes modularity. Modularisation in cellular systems can be produced by chemical specificity, spatial localisation and/or t... Read More about Modular assembly of cell systems biology models using P systems.