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Pathway discovery using transcriptomic profiles in adult-onset severe asthma

Hekking, Pieter-Paul; Loza, Matt J.; Pavlidis, Stelios; de Meulder, Bertrand; Lefaudeux, Diane; Baribaud, Fred; Auffray, Charles; Wagener, Ariane H.; Brinkman, Paul; Lutter, Rene; Bansal, Aruna T.; Sousa, Ana R.; Bates, Steve A.; Pandis, Yannis; Fleming, Louise J.; Shaw, Dominique E.; Fowler, Stephen J.; Guo, Y.; Meiser, Andrea; Sun, Kai; Corfield, Julie; Howarth, Peter H.; Bel, Elisabeth H.; Adcock, Ian M.; Chung, Kian Fan; Djukanovic, Ratko; Sterk, Peter J.

Authors

Pieter-Paul Hekking

Matt J. Loza

Stelios Pavlidis

Bertrand de Meulder

Diane Lefaudeux

Fred Baribaud

Charles Auffray

Ariane H. Wagener

Paul Brinkman

Rene Lutter

Aruna T. Bansal

Ana R. Sousa

Steve A. Bates

Yannis Pandis

Louise J. Fleming

Dominique E. Shaw

Stephen J. Fowler

Y. Guo

Andrea Meiser

Kai Sun

Julie Corfield

Peter H. Howarth

Elisabeth H. Bel

Ian M. Adcock

Kian Fan Chung

Ratko Djukanovic

Peter J. Sterk



Abstract

Background: Adult-onset severe asthma is characterized by highly symptomatic disease despite high-intensity asthma treatments. Understanding of the underlying pathways of this heterogeneous disease is needed for the development of targeted treatments. Gene set variation analysis is a statistical technique used to identify gene profiles in heterogeneous samples.
Objective: We sought to identify gene profiles associated with adult-onset severe asthma.
Methods: This was a cross-sectional, observational study in which adult patients with adult-onset of asthma (defined as starting at age >18 years) as compared with childhood-onset severe asthma (

Journal Article Type Article
Acceptance Date Jun 21, 2017
Online Publication Date Jul 26, 2017
Publication Date 2018-04
Deposit Date May 17, 2018
Journal Journal of Allergy and Clinical Immunology
Print ISSN 0091-6749
Electronic ISSN 0091-6749
Publisher Elsevier
Peer Reviewed Peer Reviewed
Volume 141
Issue 4
Pages 1280-1290
DOI https://doi.org/10.1016/j.jaci.2017.06.037
Keywords Adult-onset asthma, severe asthma, gene set variation
analysis, phenotyping, transcriptomics, mechanisms, eosinophils, mast cells, ILC3
Public URL https://nottingham-repository.worktribe.com/output/929621
Publisher URL https://www.jacionline.org/article/S0091-6749(17)31195-8/abstract


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