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Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR

Sturrock, Craig; Woodhall, James; Brown, Matthew; Walker, Catherine; Mooney, Sacha J.; Ray, Rumiana V.

Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR Thumbnail


Authors

James Woodhall

Matthew Brown

Catherine Walker

SACHA MOONEY sacha.mooney@nottingham.ac.uk
Professor of Soil Physics

Profile image of RUMIANA RAY

RUMIANA RAY RUMIANA.RAY@NOTTINGHAM.AC.UK
Professor of Plant Pathology



Abstract

Rhizoctonia solani is a plant pathogenic fungus that causes significant establishment and yield losses to several important food crops globally. This is the first application of high resolution X-ray micro Computed Tomography (X-ray μCT) and real-time PCR to study host–pathogen interactions in situ and elucidate the mechanism of Rhizoctonia damping-off disease over a 6-day period caused by R. solani, anastomosis group (AG) 2-1 in wheat (Triticum aestivum cv. Gallant) and oil seed rape (OSR, Brassica napus cv. Marinka). Temporal, non-destructive analysis of root system architectures was performed using RooTrak and validated by the destructive method of root washing. Disease was assessed visually and related to pathogen DNA quantification in soil using real-time PCR. R. solani AG2-1 at similar initial DNA concentrations in soil was capable of causing significant damage to the developing root systems of both wheat and OSR. Disease caused reductions in primary root number, root volume, root surface area, and convex hull which were affected less in the monocotyledonous host. Wheat was more tolerant to the pathogen, exhibited fewer symptoms and developed more complex root systems. In contrast, R. solani caused earlier damage and maceration of the taproot of the dicot, OSR. Disease severity was related to pathogen DNA accumulation in soil only for OSR, however, reductions in root traits were significantly associated with both disease and pathogen DNA. The method offers the first steps in advancing current understanding of soil-borne pathogen behavior in situ at the pore scale, which may lead to the development of mitigation measures to combat disease influence in the field.

Citation

Sturrock, C., Woodhall, J., Brown, M., Walker, C., Mooney, S. J., & Ray, R. V. (in press). Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR. Frontiers in Plant Science, 6, https://doi.org/10.3389/fpls.2015.00461

Journal Article Type Article
Acceptance Date Jun 10, 2015
Online Publication Date Jun 24, 2015
Deposit Date Nov 18, 2016
Publicly Available Date Nov 18, 2016
Journal Frontiers in Plant Science
Electronic ISSN 1664-462X
Publisher Frontiers Media
Peer Reviewed Peer Reviewed
Volume 6
DOI https://doi.org/10.3389/fpls.2015.00461
Keywords Fungi; Oil seed rape; QPCR; Rhizoctonia solani; Soil; Wheat; X-ray Computed Tomography
Public URL https://nottingham-repository.worktribe.com/output/753822
Publisher URL http://journal.frontiersin.org/article/10.3389/fpls.2015.00461/full
Contract Date Nov 18, 2016

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