Professor TONY PRIDMORE's Outputs (54)

On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images (2014)
Journal Article
Mairhofer, S., Sturrock, C., Wells, D. M., Bennett, M. J., Mooney, S. J., & Pridmore, T. P. (2014). On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images. Functional Plant Biology, 42(5), 460-470. https://doi.org/10.1071/FP14071

© CSIRO 2015. X-ray microcomputed tomography (μCT) allows nondestructive visualisation of plant root systems within their soil environment and thus offers an alternative to the commonly used destructive methodologies for the examination of plant root... Read More about On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images.

Automated recovery of 3D models of plant shoots from multiple colour images (2014)
Journal Article
Pound, M. P., French, A. P., Murchie, E. H., & Pridmore, T. P. (2014). Automated recovery of 3D models of plant shoots from multiple colour images. Plant Physiology, 166(4), https://doi.org/10.1104/pp.114.248971

Increased adoption of the systems approach to biological research has focussed attention on the use of quantitative models of biological objects. This includes a need for realistic 3D representations of plant shoots for quantification and modelling.... Read More about Automated recovery of 3D models of plant shoots from multiple colour images.

Systems Analysis of Auxin Transport in the Arabidopsis Root Apex (2014)
Journal Article
Band, L. R., Wells, D. M., Fozard, J. A., Ghetiu, T., French, A. P., Pound, M. P., Wilson, M. H., Yu, L., Li, W., Hijazi, H. I., Oh, J., Pearce, S. P., Perez-Amador, M. A., Yun, J., Kramer, E., Alonso, J. M., Godin, C., Vernoux, T., Hodgman, T. C., Pridmore, T. P., …Bennett, M. J. (2014). Systems Analysis of Auxin Transport in the Arabidopsis Root Apex. Plant Cell, 26(3), 862-875. https://doi.org/10.1105/tpc.113.119495

Auxin is a key regulator of plant growth and development. Within the root tip, auxin distribution plays a crucial role specifying developmental zones and coordinating tropic responses. Determining how the organ-scale auxin pattern is regulated at the... Read More about Systems Analysis of Auxin Transport in the Arabidopsis Root Apex.

Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending (2014)
Journal Article
Dyson, R. J., Vizcay-Barrena, G., Band, L. R., Fernandes, A. N., French, A. P., Fozard, J. A., Hodgman, T. C., Kenobi, K., Pridmore, T. P., Stout, M., Wells, D. M., Wilson, M. H., Bennett, M. J., & Jensen, O. E. (2014). Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytologist, 202(4), 1212-1222. https://doi.org/10.1111/nph.12764

Root elongation and bending require the coordinated expansion of multiple cells of different types. These processes are regulated by the action of hormones that can target distinct cell layers. We use a mathematical model to characterise the influenc... Read More about Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending.

Time-Profiling Fluorescent Reporters in the Arabidopsis Root (2013)
Book Chapter
Larrieu, A. P., French, A. P., Pridmore, T. P., Bennett, M. J., & Wells, D. M. (2014). Time-Profiling Fluorescent Reporters in the Arabidopsis Root. In Plant chemical genomics : methods and protocols (11-17). Springer. https://doi.org/10.1007/978-1-62703-592-7_2

Confocal laser scanning microscopy is a useful nondestructive approach for the visualization of fluorescent reporters in planta. Samples are usually placed between a slide and a cover slip which, although suited to single time-point imaging, does not... Read More about Time-Profiling Fluorescent Reporters in the Arabidopsis Root.

Behavioural changes in dairy cows with lameness in an automatic milking system (2013)
Journal Article
Miguel-Pacheco, G., Kaler, J., Remnant, J., Cheyne, L., Abbott, C., French, A. P., Pridmore, T. P., & Huxley, J. N. (2014). Behavioural changes in dairy cows with lameness in an automatic milking system. Applied Animal Behaviour Science, 150, 1-8. https://doi.org/10.1016/j.applanim.2013.11.003

There is a tendency worldwide for the automation of farms; this has included the introduction of automatic milking systems (AMS) in the dairy industry. Lameness in dairy cows is highly prevalent and painful. These impacts potentially affect not only... Read More about Behavioural changes in dairy cows with lameness in an automatic milking system.

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence (2013)
Journal Article
Peret, B., Middleton, A. M., French, A. P., Larrieu, A., Bishopp, A., Njo, M., Wells, D. M., Porco, S., Mellor, N., Band, L. R., Casimiro, I., Kleine-Vehn, J., Vanneste, S., Sairanen, I., Mallet, R., Sandberg, G., Ljung, K., Beeckman, T., Benkova, E., Friml, J., …Bennett, M. J. (2013). Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Molecular Systems Biology, 9(1), Article 699. https://doi.org/10.1038/msb.2013.43

In Arabidopsis, lateral roots originate from pericycle cells deep within the primary root. New lateral root primordia (LRP) have to emerge through several overlaying tissues. Here, we report that auxin produced in new LRP is transported towards the o... Read More about Sequential induction of auxin efflux and influx carriers regulates lateral root emergence.

Effects of X-ray dose on rhizosphere studies using X-ray computed tomography (2013)
Journal Article
Zappala, S., Helliwell, J. R., Tracy, S., Mairhofer, S., Sturrock, C., Pridmore, T., Bennett, M. J., & Mooney, S. J. (2013). Effects of X-ray dose on rhizosphere studies using X-ray computed tomography. PLoS ONE, 8(6), Article e67250. https://doi.org/10.1371/journal.pone.0067250

X-ray Computed Tomography (CT) is a non-destructive imaging technique originally designed for diagnostic medicine, which was adopted for rhizosphere and soil science applications in the early 1980s. X-ray CT enables researchers to simultaneously visu... Read More about Effects of X-ray dose on rhizosphere studies using X-ray computed tomography.

RootNav: navigating images of complex root architectures (2013)
Journal Article
Pound, M. P., French, A. P., Atkinson, J. A., Wells, D. M., Bennett, M. J., & Pridmore, T. (2013). RootNav: navigating images of complex root architectures. Plant Physiology, 162(4), 1802-1814. https://doi.org/10.1104/pp.113.221531

We present a novel image analysis tool that allows the semiautomated quantification of complex root system architectures in a range of plant species grown and imaged in a variety of ways. The automatic component of RootNav takes a top-down approach,... Read More about RootNav: navigating images of complex root architectures.

Recovering complete plant root system architectures from soil via X-ray μ-computed tomography (2013)
Journal Article
Mairhofer, S., Zappala, S., Tracy, S., Sturrock, C., Bennett, M. J., Mooney, S. J., & Pridmore, T. (2013). Recovering complete plant root system architectures from soil via X-ray μ-computed tomography. Plant Methods, 9, Article 8. https://doi.org/10.1186/1746-4811-9-8

Background: X-ray micro-Computed Tomography (μCT) offers the ability to visualise the three-dimensional
structure of plant roots growing in their natural environment – soil. Recovery of root architecture descriptions from X-ray CT data is, however,... Read More about Recovering complete plant root system architectures from soil via X-ray μ-computed tomography.

Tissue-level segmentation and tracking of cells in growing plant roots (2012)
Journal Article
Sethuraman, V., French, A., Wells, D., Kenobi, K., & Pridmore, T. (2012). Tissue-level segmentation and tracking of cells in growing plant roots. Machine Vision and Applications, 23(4), 639-658. https://doi.org/10.1007/s00138-011-0329-9

With the spread of systems approaches to biological research, there is increasing demand for methods and tools capable of extracting quantitative measurements of biological samples from individual and time-based sequences of microscope images. To thi... Read More about Tissue-level segmentation and tracking of cells in growing plant roots.

The spatial character of sensor technology (2006)
Presentation / Conference Contribution
Reeves, S., Pridmore, T., Crabtree, A., Green, J., Benford, S., & O'Malley, C. The spatial character of sensor technology. Presented at Designing Interactive Systems (DIS)

By considering the spatial character of sensor-based interactive systems, this paper investigates how discussions of seams and seamlessness in ubiquitous computing neglect the complex spatial character that is constructed as a side-effect of deployin... Read More about The spatial character of sensor technology.

Expected, sensed, and desired: A framework for designing sensing-based interaction (2005)
Journal Article
Benford, S., Schnädelbach, H., Koleva, B., Anastasi, R., Greenhalgh, C., Rodden, T., Green, J., Ghali, A., Pridmore, T., Gaver, B., Boucher, A., Walker, B., Pennington, S., Schmidt, A., Gellersen, H., & Steed, A. (2005). Expected, sensed, and desired: A framework for designing sensing-based interaction. ACM Transactions on Computer-Human Interaction, 12(1), 3-30. https://doi.org/10.1145/1057237.1057239

Movements of interfaces can be analyzed in terms of whether they are expected, sensed, and desired. Expected movements are those that users naturally perform; sensed are those that can be measured by a computer; and desired movements are those that a... Read More about Expected, sensed, and desired: A framework for designing sensing-based interaction.

Camping in the digital wilderness: Tents and flashlights as interfaces to virtual worlds (2001)
Presentation / Conference Contribution
Green, J., Schnädelbach, H., Koleva, B., Benford, S., Pridmore, T., Medina, K., Harris, E., & Smith, H. (2001, April). Camping in the digital wilderness: Tents and flashlights as interfaces to virtual worlds. Paper presented at Conference on Human Factors in Computing Systems - Proceedings

A projection screen in the shape of a tent provides children with a shared immersive experience of a virtual world based on the metaphor of camping. RFID aerials at its entrances sense tagged children and objects as they enter and leave. Video tracki... Read More about Camping in the digital wilderness: Tents and flashlights as interfaces to virtual worlds.