Association study of human leukocyte antigen variants and idiopathic pulmonary fibrosis

Guillen-Guio, Beatriz; Paynton, Megan L.; Allen, Richard J.; Chin, Daniel P.W.; Donoghue, Lauren J.; Stockwell, Amy; Leavy, Olivia C.; Hernandez-Beeftink, Tamara; Reynolds, Carl; Cullinan, Paul; Martinez, Fernando; Booth, Helen L.; Fahy, William A.; Hall, Ian P.; Hart, Simon P.; Hill, Mike R.; Hirani, Nik; Hubbard, Richard B.; McAnulty, Robin J.; Millar, Ann B.; Navaratnam, Vidya; Oballa, Eunice; Parfrey, Helen; Saini, Gauri; Sayers, Ian; Tobin, Martin D.; Whyte, Moira K. B.; Adegunsoye, Ayodeji; Kaminski, Naftali; Ma, Shwu Fan; Strek, Mary E.; Zhang, Yingze; Fingerlin, Tasha E.; Molina-Molina, Maria; Neighbors, Margaret; Sheng, X. Rebecca; Oldham, Justin M.; Maher, Toby M.; Molyneaux, Philip L.; Flores, Carlos; Noth, Imre; Schwartz, David A.; Yaspan, Brian L.; Jenkins, R. Gisli; Wain, Louise V.; Hollox, Edward J.

Abstract

Introduction Idiopathic pulmonary fibrosis (IPF) is a chronic interstitial pneumonia marked by progressive lung fibrosis and a poor prognosis. Recent studies have highlighted the potential role of infection in the pathogenesis of IPF, and a prior association of the HLA-DQB1 gene with idiopathic fibrotic interstitial pneumonia (including IPF) has been reported. Owing to the important role that the human leukocyte antigen (HLA) region plays in the immune response, here we evaluated if HLA genetic variation was associated specifically with IPF risk. Methods We performed a meta-analysis of associations of the HLA region with IPF risk in individuals of European ancestry from seven independent case–control studies of IPF (comprising 5159 cases and 27 459 controls, including a prior study of fibrotic interstitial pneumonia). Single nucleotide polymorphisms, classical HLA alleles and amino acids were analysed and signals meeting a region-wide association threshold of p<4.5×10−4 and a posterior probability of replication >90% were considered significant. We sought to replicate the previously reported HLA-DQB1 association in the subset of studies independent of the original report. Results The meta-analysis of all seven studies identified four significant independent single nucleotide polymorphisms associated with IPF risk. However, none met the posterior probability for replication criterion. The HLA-DQB1 association was not replicated in the independent IPF studies. Conclusion Variation in the HLA region was not consistently associated with risk in studies of IPF. However, this does not preclude the possibility that other genomic regions linked to the immune response may be involved in the aetiology of IPF.

Citation

Guillen-Guio, B., Paynton, M. L., Allen, R. J., Chin, D. P., Donoghue, L. J., Stockwell, A., Leavy, O. C., Hernandez-Beeftink, T., Reynolds, C., Cullinan, P., Martinez, F., Booth, H. L., Fahy, W. A., Hall, I. P., Hart, S. P., Hill, M. R., Hirani, N., Hubbard, R. B., McAnulty, R. J., Millar, A. B., …Hollox, E. J. (2024). Association study of human leukocyte antigen variants and idiopathic pulmonary fibrosis. ERJ Open Research, 10(1), 00553-2023. https://doi.org/10.1183/23120541.00553-2023

• Journal Article Type: Article
• Acceptance Date: Nov 5, 2023
• Online Publication Date: Feb 19, 2023
• Publication Date: Feb 19, 2024
• Deposit Date: Mar 14, 2024
• Publicly Available Date: Mar 15, 2024
• Journal: ERJ Open Research
• Electronic ISSN: 2312-0541
• Publisher: European Respiratory Society
• Peer Reviewed: Peer Reviewed
• Volume: 10
• Issue: 1
• Pages: 00553-2023
• DOI: https://doi.org/10.1183/23120541.00553-2023
• Keywords: Pulmonary and Respiratory Medicine
• Public URL: https://nottingham-repository.worktribe.com/output/29259605
• Publisher URL: https://openres.ersjournals.com/content/10/1/00553-2023