Through the ages: a commentary on ‘Diversification of quantitative morphological traits in wheat’
(2024)
Journal Article
Burgess, A. J. (2024). Through the ages: a commentary on ‘Diversification of quantitative morphological traits in wheat’. Annals of Botany, Article mcae008. https://doi.org/10.1093/aob/mcae008
Outputs (42)
SOS: Speed of Stomata opening and closing is influenced by vapour pressure deficit (2024)
Journal Article
Burgess, A. J., & Ugalde, J. M. (2024). SOS: Speed of Stomata opening and closing is influenced by vapour pressure deficit. Plant Physiology, https://doi.org/10.1093/plphys/kiae066
Double trouble: Compound effects of heat and drought stress on carbon assimilation (2023)
Journal Article
Burgess, A. J. (2024). Double trouble: Compound effects of heat and drought stress on carbon assimilation. Plant Physiology, 194(3), 1255-1256. https://doi.org/10.1093/plphys/kiad647
HI from the Sky: Estimating harvest index from UAVs combined with machine learning (2023)
Journal Article
Burgess, A. J. (2024). HI from the Sky: Estimating harvest index from UAVs combined with machine learning. Plant Physiology, 194(3), 1257-1259. https://doi.org/10.1093/plphys/kiad611
The long and the short of it: Adaptation of carbon uptake and metabolic flux to different daylengths (2023)
Journal Article
Burgess, A. J., & Degen, G. E. (2024). The long and the short of it: Adaptation of carbon uptake and metabolic flux to different daylengths. Plant Physiology, 194(1), 317–318. https://doi.org/10.1093/plphys/kiad523
Pod power: Soybean pod and seed photosynthesis contributes to yield (2023)
Journal Article
Burgess, A. J., & Degen, G. E. (2023). Pod power: Soybean pod and seed photosynthesis contributes to yield. Plant Physiology, 193(2), 886–887. https://doi.org/10.1093/plphys/kiad430
Mass screening of rice mutant populations at low CO2 for identification of lowered photorespiration and respiration rates (2023)
Journal Article
Mubarak, A. N., Burgess, A. J., Pyke, K., Quick, W. P., & Murchie, E. H. (2023). Mass screening of rice mutant populations at low CO2 for identification of lowered photorespiration and respiration rates. Frontiers in Plant Science, 14, Article 1125770. https://doi.org/10.3389/fpls.2023.1125770Introduction: Identifying rice (Oryza sativa) germplasm with improved efficiency of primary metabolism is of utmost importance in order to increase yields. One such approach can be attained through screening genetically diverse populations under alte... Read More about Mass screening of rice mutant populations at low CO2 for identification of lowered photorespiration and respiration rates.
Breath of Green Life: Reduction in plant day and night respiration under elevated CO2 (2023)
Journal Article
Burgess, A. J. (2023). Breath of Green Life: Reduction in plant day and night respiration under elevated CO2. Plant Physiology, 192(1), 31-33. https://doi.org/10.1093/plphys/kiad087
Paving the way towards future-proofing our crops (2023)
Journal Article
Baekelandt, A., Saltenis, V. L., Nacry, P., Malyska, A., Cornelissen, M., Nanda, A. K., …Parry, M. A. (2023). Paving the way towards future-proofing our crops. Food and Energy Security, 12(3), Article e441. https://doi.org/10.1002/fes3.441To meet the increasing global demand for food, feed, fibre and other plant-derived products, a steep increase in crop productivity is a scientifically and technically challenging imperative. The CropBooster-P project, a response to the H2020 call ‘Fu... Read More about Paving the way towards future-proofing our crops.
Drones in the Sky: Towards a More Sustainable Agriculture (2022)
Journal Article
Arza-García, M., & Burgess, A. J. (2023). Drones in the Sky: Towards a More Sustainable Agriculture. Agriculture, 13(1), Article 84. https://doi.org/10.3390/agriculture13010084
Space farming: Horticulture systems on spacecraft and outlook to planetary space exploration (2022)
Journal Article
Nguyen, M. T. P., Knowling, M., Tran, N. N., Burgess, A., Fisk, I., Watt, M., …Hessel, V. (2023). Space farming: Horticulture systems on spacecraft and outlook to planetary space exploration. Plant Physiology and Biochemistry, 194, 708-721. https://doi.org/10.1016/j.plaphy.2022.12.017Successful human space exploration requires more products than can be taken as payload. There is a need, therefore, for in-space circular manufacturing. Requirements for this include limited resource inflow, from either Earth or other planets and the... Read More about Space farming: Horticulture systems on spacecraft and outlook to planetary space exploration.
Improving crop yield potential: Underlying biological processes and future prospects (2022)
Journal Article
Burgess, A. J., Masclaux‐Daubresse, C., Strittmatter, G., Weber, A. P. M., Taylor, S. H., Harbinson, J., …Baekelandt, A. (2023). Improving crop yield potential: Underlying biological processes and future prospects. Food and Energy Security, 12(1), Article e435. https://doi.org/10.1002/fes3.435The growing world population and global increases in the standard of living both result in an increasing demand for food, feed and other plant‐derived products. In the coming years, plant‐based research will be among the major drivers ensuring food s... Read More about Improving crop yield potential: Underlying biological processes and future prospects.
Not all Calvin's are equal: Differential control of the Calvin cycle in C3 versus C4 plants (2022)
Journal Article
Burgess, A. J., & Wang, P. (2023). Not all Calvin's are equal: Differential control of the Calvin cycle in C3 versus C4 plants. Plant Physiology, 191(2), 817-819. https://doi.org/10.1093/plphys/kiac531
Pieces of the 3D puzzle: Identification of genes underlying rice canopy architecture (2022)
Journal Article
Burgess, A. J., & Majda, M. (2023). Pieces of the 3D puzzle: Identification of genes underlying rice canopy architecture. Plant Physiology, 191(1), 1-2. https://doi.org/10.1093/plphys/kiac474
Wine without water: Improving grapevine tolerance to drought (2022)
Journal Article
Burgess, A. J. (2022). Wine without water: Improving grapevine tolerance to drought. Plant Physiology, 190(3), 1550-1551. https://doi.org/10.1093/plphys/kiac381
The deployment of intercropping and agroforestry as adaptation to climate change (2022)
Journal Article
Burgess, A. J., Correa Cano, M. E., & Parkes, B. (2022). The deployment of intercropping and agroforestry as adaptation to climate change. Crop and Environment, 1(2), 145-160. https://doi.org/10.1016/j.crope.2022.05.001Food security is threatened by the combined pressures of increasing populations and climate change. Agricultural land is vulnerable to overexploitation and environmental change. Within this review, we identify the role of multiple cropping systems as... Read More about The deployment of intercropping and agroforestry as adaptation to climate change.
Sunflecks in the upper canopy: dynamics of light-use efficiency in sun and shade leaves of Fagus sylvatica (2022)
Journal Article
Durand, M., Stangl, Z. R., Salmon, Y., Burgess, A. J., Murchie, E. H., & Robson, T. M. (2022). Sunflecks in the upper canopy: dynamics of light-use efficiency in sun and shade leaves of Fagus sylvatica. New Phytologist, 235(4), 1365-1378. https://doi.org/10.1111/nph.18222Sunflecks are transient patches of direct radiation that provide a substantial proportion of the daily irradiance to leaves in the lower canopy. In this position, faster photosynthetic induction would allow for higher sunfleck-use efficiency, as is c... Read More about Sunflecks in the upper canopy: dynamics of light-use efficiency in sun and shade leaves of Fagus sylvatica.
A future in 3D: Analyzing morphology in all dimensions (2022)
Journal Article
Burgess, A. J., & Majda, M. (2022). A future in 3D: Analyzing morphology in all dimensions. Plant Physiology, 189(3), 1175-1176. https://doi.org/10.1093/plphys/kiac190
Casting light on the architecture of crop yield (2022)
Journal Article
Murchie, E. H., & Burgess, A. J. (2022). Casting light on the architecture of crop yield. Crop and Environment, 1(1), 74-85. https://doi.org/10.1016/j.crope.2022.03.009Crop canopy architecture is a central component of yield. The arrangement of leaves in three-dimensional space defines the efficiency of absorption of radiation and its conversion into dry matter at the canopy level. The description of architecture i... Read More about Casting light on the architecture of crop yield.
Eustress in Space: Opportunities for Plant Stressors Beyond the Earth Ecosystem (2022)
Journal Article
Hessel, V., Liang, S., Tran, N. N., Escribà-Gelonch, M., Zeckovic, O., Knowling, M., …Burgess, A. (2022). Eustress in Space: Opportunities for Plant Stressors Beyond the Earth Ecosystem. Frontiers in Astronomy and Space Sciences, 9, Article 841211. https://doi.org/10.3389/fspas.2022.841211Human space exploration cannot occur without reliable provision of nutritious and palatable food to sustain physical and mental well-being. This ultimately will depend upon efficient production of food in space, with on-site manufacturing on space st... Read More about Eustress in Space: Opportunities for Plant Stressors Beyond the Earth Ecosystem.
Abiotic stress, acclimation, and adaptation in carbon fixation processes (2022)
Book Chapter
Murchie, E. H., McAusland, L., & Burgess, A. J. (2022). Abiotic stress, acclimation, and adaptation in carbon fixation processes. In A. Ruban, C. H. Foyer, & E. H. Murchie (Eds.), Photosynthesis in Action: Harvesting Light, Generating Electrons, Fixing Carbon (103-132). Academic Press. https://doi.org/10.1016/b978-0-12-823781-6.00011-3Chloroplast CO2 assimilation rate is highly sensitive to environmental changes, and this has a great influence on productivity. Changes in temperature, light, humidity, nutrients, and salinity can all affect processes that limit photosynthesis. In th... Read More about Abiotic stress, acclimation, and adaptation in carbon fixation processes.
A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation (2021)
Journal Article
Gibbs, J. A., Mcausland, L., Robles-Zazueta, C. A., Murchie, E. H., & Burgess, A. J. (2021). A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation. Frontiers in Plant Science, 12, Article 780180. https://doi.org/10.3389/fpls.2021.780180Stomata are integral to plant performance, enabling the exchange of gases between the atmosphere and the plant. The anatomy of stomata influences conductance properties with the maximal conductance rate, gsmax, calculated from density and size. Howev... Read More about A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation.
Prospects to improve the nutritional quality of crops (2021)
Journal Article
Scharff, L. B., Saltenis, V. L., Jensen, P. E., Baekelandt, A., Burgess, A. J., Burow, M., …Pribil, M. (2022). Prospects to improve the nutritional quality of crops. Food and Energy Security, 11(1), Article e327. https://doi.org/10.1002/fes3.327A growing world population as well as the need to enhance sustainability and health create challenges for crop breeding. To address these challenges, not only quantitative but also qualitative improvements are needed, especially regarding the macro-... Read More about Prospects to improve the nutritional quality of crops.
The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy (2021)
Journal Article
Burgess, A. J., Durand, M., Retkute, R., Gibbs, J. A., Robson, T. M., & Murchie, E. H. (2021). The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy. Plant, Cell and Environment, 44(11), 3524-3537. https://doi.org/10.1111/pce.14168Under field conditions, plants are subject to wind-induced movement which creates fluctuations of light intensity and spectral quality reaching the leaves, defined here as windflecks. Within this study, irradiance within two contrasting wheat (Tritic... Read More about The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy.
Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high-resolution 3D reconstruction (2020)
Journal Article
Burgess, A. J., Herman, T., Ali, A., & Murchie, E. H. (2021). Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high-resolution 3D reconstruction. in silico Plants, 3(1), https://doi.org/10.1093/insilicoplants/diaa017Increasing nitrogen use efficiency is a key target for yield improvement programs. Here we identify features of rice canopy architecture during altered N availability and link them to photosynthetic productivity. Empirical mathematical modelling, hig... Read More about Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high-resolution 3D reconstruction.
Photoprotective energy dissipation is greater in the lower, not the upper, regions of a rice canopy: A 3D analysis (2020)
Journal Article
Foo, C., Burgess, A., Retkute, R., Tree-Intong, P., Ruban, A., & Murchie, E. (2020). Photoprotective energy dissipation is greater in the lower, not the upper, regions of a rice canopy: A 3D analysis. Journal of Experimental Botany, 71(22), 7382-7392. https://doi.org/10.1093/jxb/eraa411© 2020 The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Experimental Biology. High light intensities raise photosynthetic and plant growth rates but can cause damage to the photosynthetic machinery. The likelihood... Read More about Photoprotective energy dissipation is greater in the lower, not the upper, regions of a rice canopy: A 3D analysis.
Recovering Wind-induced Plant motion in Dense Field Environments via Deep Learning and Multiple Object Tracking (2019)
Journal Article
Gibbs, J. A., Burgess, A. J., Pound, M. P., Pridmore, T. P., & Murchie, E. H. (2019). Recovering Wind-induced Plant motion in Dense Field Environments via Deep Learning and Multiple Object Tracking. Plant Physiology, 181, 28-42. https://doi.org/10.1104/pp.19.00141Understanding the relationships between local environmental conditions and plant structure and function is critical for both fundamental science and for improving the performance of crops in field settings. Wind-induced plant motion is important in m... Read More about Recovering Wind-induced Plant motion in Dense Field Environments via Deep Learning and Multiple Object Tracking.
A canopy conundrum: can wind-induced movement help to increase crop productivity by relieving photosynthetic limitations? (2019)
Journal Article
Burgess, A. J., Gibbs, J. A., & Murchie, E. H. (2019). A canopy conundrum: can wind-induced movement help to increase crop productivity by relieving photosynthetic limitations?. Journal of Experimental Botany, 70(9), 2371-2380. https://doi.org/10.1093/jxb/ery424Wind-induced movement is a ubiquitous occurrence for all plants grown in natural or agricultural settings and in the context of high, damaging wind speeds it has been well studied. However, the impact of lower wind speeds (that do not cause any damag... Read More about A canopy conundrum: can wind-induced movement help to increase crop productivity by relieving photosynthetic limitations?.
The causes of altered chlorophyll fluorescence quenching induction in the Arabidopsis mutant lacking all minor antenna complexes (2018)
Journal Article
Townsend, A. J., Saccon, F., Giovagnetti, V., Wilson, S., Ungerer, P., & Ruban, A. V. (2018). The causes of altered chlorophyll fluorescence quenching induction in the Arabidopsis mutant lacking all minor antenna complexes. BBA - Bioenergetics, 1859(9), 666-675. https://doi.org/10.1016/j.bbabio.2018.03.005
Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies (2018)
Journal Article
Retkute, R., Townsend, A. J., Murchie, E. H., Jensen, O. E., & Preston, S. P. (2018). Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies. Annals of Botany, 122(2), 291–302. https://doi.org/10.1093/aob/mcy067Background and Aims Diurnal changes in solar position and intensity combined with the structural complexity of plant architecture result in highly variable and dynamic light patterns within the plant canopy. This affects productivity through the comp... Read More about Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies.
Ascorbate-mediated regulation of growth, photoprotection, and photoinhibition in Arabidopsis thaliana (2018)
Journal Article
Plumb, W., Townsend, A. J., Rasool, B., Alomrani, S., Razak, N., Karpinska, B., …Foyer, C. H. (2018). Ascorbate-mediated regulation of growth, photoprotection, and photoinhibition in Arabidopsis thaliana. Journal of Experimental Botany, 69(11), 2823-2835. https://doi.org/10.1093/jxb/ery170The requirements for ascorbate for growth and photosynthesis were assessed under low (LL; 250 µmol m–2 s–1) or high (HL; 1600 µmol m–2 s–1) irradiance in wild-type Arabidopsis thaliana and two ascorbate synthesis mutants (vtc2-1 and vtc2-4) that have... Read More about Ascorbate-mediated regulation of growth, photoprotection, and photoinhibition in Arabidopsis thaliana.
Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies (2018)
Working Paper
Retkute, R., Townsend, A. J., Murchie, E. H., Jensen, O. E., & Preston, S. P. Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopiesBackground and Aims Diurnal changes in solar position and intensity combined with the structural complexity of plant architecture result in highly variable and dynamic light patterns within the plant canopy. This affects productivity through the comp... Read More about Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies.
Suboptimal acclimation of photosynthesis to light in wheat canopies (2018)
Journal Article
Townsend, A. J., Retkute, R., Chinnathambi, K., Randall, J. W., Foulkes, J. F., Carmo-Silva, E., & Murchie, E. H. (in press). Suboptimal acclimation of photosynthesis to light in wheat canopies. Plant Physiology, 176(2), https://doi.org/10.1104/pp.17.01213Photosynthetic acclimation (photoacclimation) is the process whereby leaves alter their morphology and/or biochemistry to optimise photosynthetic efficiency and productivity according to long-term changes in the light environment. Three-dimensional (... Read More about Suboptimal acclimation of photosynthesis to light in wheat canopies.
Dynamic interplay between photodamage and photoprotection in photosystem II (2018)
Journal Article
Townsend, A. J., Ware, M. A., & Ruban, A. V. (2018). Dynamic interplay between photodamage and photoprotection in photosystem II. Plant, Cell and Environment, 41(5), 1098-1112. https://doi.org/10.1111/pce.13107
Deep machine learning provides state-of-the-art performance in image-based plant phenotyping (2017)
Journal Article
Pound, M. P., Atkinson, J. A., Townsend, A. J., Wilson, M. H., Griffiths, M., Jackson, A. S., …French, A. P. (2017). Deep machine learning provides state-of-the-art performance in image-based plant phenotyping. GigaScience, 6(10), Article gix083. https://doi.org/10.1093/gigascience/gix083© The Author 2017. In plant phenotyping, it has become important to be able to measure many features on large image sets in order to aid genetic discovery. The size of the datasets, now often captured robotically, often precludes manual inspection, h... Read More about Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.
Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction (2017)
Journal Article
Burgess, A. J., Retkute, R., Herman, T., & Murchie, E. H. (2017). Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction. Frontiers in Plant Science, 8, Article 734. https://doi.org/10.3389/fpls.2017.00734The arrangement of leaf material is critical in determining the light environment, and subsequently the photosynthetic productivity of complex crop canopies. However, links between specific canopy architectural traits and photosynthetic productivity... Read More about Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction.
Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems (2017)
Journal Article
Burgess, A. J., Retkute, R., Pound, M. P., Mayes, S., & Murchie, E. H. (2017). Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems. Annals of Botany, 119(4), 517-532. https://doi.org/10.1093/aob/mcw242Background and Aims: Intercropping systems contain two or more species simultaneously in close proximity. Due to contrasting features of the component crops, quantification of the light environment and photosynthetic productivity is extremely difficu... Read More about Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems.
The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis (2016)
Journal Article
Burgess, A. J., Retkute, R., Preston, S. P., Jensen, O. E., Pound, M. P., Pridmore, T. P., & Murchie, E. H. (2016). The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis. Frontiers in Plant Science, 7(1392), https://doi.org/10.3389/fpls.2016.01392Physical perturbation of a plant canopy brought about by wind is a ubiquitous phenomenon and yet its biological importance has often been overlooked. This is partly due to the complexity of the issue at hand: wind-induced movement (or mechanical exci... Read More about The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis.
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping (2016)
Working Paper
Pound, M. P., Burgess, A. J., Wilson, M. H., Atkinson, J. A., Griffiths, M., Jackson, A. S., …French, A. P. Deep Machine Learning provides state-of-the-art performance in image-based plant phenotypingDeep learning is an emerging field that promises unparalleled results on many data analysis problems. We show the success offered by such techniques when applied to the challenging problem of image-based plant phenotyping, and demonstrate state-of-th... Read More about Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping.
High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field (2015)
Journal Article
Burgess, A. J., Retkute, R., Pound, M. P., Foulkes, J., Preston, S. P., Jensen, O. E., …Murchie, E. H. (2015). High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field. Plant Physiology, 169(2), 1192-1204. https://doi.org/10.1104/pp.15.00722Photoinhibition reduces photosynthetic productivity; however, it is difficult to quantify accurately in complex canopies partly because of a lack of high-resolution structural data on plant canopy architecture, which determines complex fluctuations o... Read More about High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field.
Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light? (2015)
Journal Article
Retkute, R., Smith-Unna, S. E., Smith, R. W., Burgess, A. J., Jensen, O. E., Johnson, G. N., …Murchie, E. H. (2015). Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light?. Journal of Experimental Botany, 66(9), 2437-2447. https://doi.org/10.1093/jxb/erv055Plants have evolved complex mechanisms to balance the efficient use of absorbed light energy in photosynthesis with the capacity to use that energy in assimilation, so avoiding potential damage from excess light. This is particularly important under... Read More about Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light?.
Adaptation for climate-sensitive crops using agroforestry: case studies for coffee and rice (2015)
Book Chapter
Lin, B., Murchie, E., & Burgess, A. (2015). Adaptation for climate-sensitive crops using agroforestry: case studies for coffee and rice. In C. K. Ong, C. R. Black, & J. Wilson (Eds.), Tree-crop interactions: agroforestry in a changing climate (278-308). CAB International. https://doi.org/10.1079/9781780645117.0278This chapter examines how agroforestry systems can provide an effective adaptive strategy for agricultural production in the face of climate change and analyses its effectiveness using case studies for two important commercial crops produced by small... Read More about Adaptation for climate-sensitive crops using agroforestry: case studies for coffee and rice.