All Outputs (700)

First Trimester Maternal Homocysteine and Embryonic and Fetal Growth: The Rotterdam Periconception Cohort (2022)
Journal Article
Rubini, E., Snoek, K. M., Schoenmakers, S., Willemsen, S. P., Sinclair, K. D., Rousian, M., & Steegers-Theunissen, R. P. (2022). First Trimester Maternal Homocysteine and Embryonic and Fetal Growth: The Rotterdam Periconception Cohort. Nutrients, 14(6), Article 1129. https://doi.org/10.3390/nu14061129

Homocysteine is a marker for derangements in one-carbon metabolism. Elevated homocysteine may represent a causal link between poor maternal nutrition and impaired embryonic and fetal development. We sought to investigate associations between referenc... Read More about First Trimester Maternal Homocysteine and Embryonic and Fetal Growth: The Rotterdam Periconception Cohort.

Illuminating Host-Parasite Interaction at the Cellular and Subcellular Levels with Infrared Microspectroscopy (2022)
Journal Article
Elsheikha, H. M., Al-Sandaqchi, A. T., Harun, M. S., Winterton, F., Altharawi, A., Elsaied, N. A., …Chan, K. L. A. (2022). Illuminating Host-Parasite Interaction at the Cellular and Subcellular Levels with Infrared Microspectroscopy. Cells, 11(5), Article 811. https://doi.org/10.3390/cells11050811

Toxoplasma gondii (T. gondii) is an opportunistic protozoan that can cause brain infection and other serious health consequences in immuno-compromised individuals. This parasite has a remarkable ability to cross biological barriers and exploit the ho... Read More about Illuminating Host-Parasite Interaction at the Cellular and Subcellular Levels with Infrared Microspectroscopy.

X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil (2022)
Journal Article
Griffiths, M., Mellor, N., Sturrock, C. J., Atkinson, B. S., Johnson, J., Mairhofer, S., …Wells, D. M. (2022). X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil. Plant Phenome Journal, 5(1), Article e20036. https://doi.org/10.1002/ppj2.20036

The spatial arrangement of the root system, termed root system architecture, is important for resource acquisition as it directly affects the soil zone explored. Methods for phenotyping roots are mostly destructive, which prevents analysis of roots o... Read More about X-ray CT reveals 4D root system development and lateral root responses to nitrate in soil.

Mitochondrial retrograde signaling through UCP1-mediated inhibition of the plant oxygen-sensing pathway (2022)
Journal Article
Barreto, P., Dambire, C., Sharma, G., Vicente, J., Osborne, R., De Carvalho, J. E., …Arruda, P. (2022). Mitochondrial retrograde signaling through UCP1-mediated inhibition of the plant oxygen-sensing pathway. Current Biology, 32(6), 1403-1411.e4. https://doi.org/10.1016/j.cub.2022.01.037

Mitochondrial retrograde signaling is an important component of intracellular stress signaling in eukaryotes. UNCOUPLING PROTEIN (UCP)1 is an abundant plant inner-mitochondrial membrane protein with multiple functions including uncoupled respiration... Read More about Mitochondrial retrograde signaling through UCP1-mediated inhibition of the plant oxygen-sensing pathway.

Root traits for low input agroecosystems in Africa: Lessons from three case studies (2022)
Journal Article
Ndoye, M. S., Burridge, J., Bhosale, R., Grondin, A., & Laplaze, L. (2022). Root traits for low input agroecosystems in Africa: Lessons from three case studies. Plant, Cell and Environment, 45(3), 637-649. https://doi.org/10.1111/pce.14256

In many regions across Africa, agriculture is largely based on low-input and small-holder farming systems that use little inorganic fertilisers and have limited access to irrigation and mechanisation. Improving agricultural practices and developing n... Read More about Root traits for low input agroecosystems in Africa: Lessons from three case studies.

A Yeast-Based Functional Assay to Study Plant N-Degron – N-Recognin Interactions (2022)
Journal Article
Kozlic, A., Winter, N., Telser, T., Reimann, J., Rose, K., Nehlin, L., …Bachmair, A. (2022). A Yeast-Based Functional Assay to Study Plant N-Degron – N-Recognin Interactions. Frontiers in Plant Science, 12, Article 806129. https://doi.org/10.3389/fpls.2021.806129

The N-degron pathway is a branch of the ubiquitin-proteasome system where amino-terminal residues serve as degradation signals. In a synthetic biology approach, we expressed ubiquitin ligase PRT6 and ubiquitin conjugating enzyme 2 (AtUBC2) from Arabi... Read More about A Yeast-Based Functional Assay to Study Plant N-Degron – N-Recognin Interactions.

Hippocampal Disinhibition Reduces Contextual and Elemental Fear Conditioning While Sparing the Acquisition of Latent Inhibition (2022)
Journal Article
Williams, S. A., Gwilt, M., Hock, R., Taylor, C., Loayza, J., Stevenson, C. W., …Bast, T. (2022). Hippocampal Disinhibition Reduces Contextual and Elemental Fear Conditioning While Sparing the Acquisition of Latent Inhibition. eNeuro, 9(1), ENEURO.0270-21.2021. https://doi.org/10.1523/eneuro.0270-21.2021

Hippocampal neural disinhibition, i.e., reduced GABAergic inhibition, is a key feature of schizophrenia pathophysiology. The hippocampus is an important part of the neural circuitry that controls fear conditioning and can also modulate prefrontal and... Read More about Hippocampal Disinhibition Reduces Contextual and Elemental Fear Conditioning While Sparing the Acquisition of Latent Inhibition.

Emergent SARS-CoV-2 variants: comparative replication dynamics and high sensitivity to thapsigargin (2021)
Journal Article
Al-Beltagi, S., Goulding, L. V., Chang, D. K., Mellits, K. H., Hayes, C. J., Gershkovich, P., …Chang, K. (2021). Emergent SARS-CoV-2 variants: comparative replication dynamics and high sensitivity to thapsigargin. Virulence, 12(1), 2946-2956. https://doi.org/10.1080/21505594.2021.2006960

The struggle to control the COVID-19 pandemic is made challenging by the emergence of virulent SARS-CoV-2 variants. To gain insight into their replication dynamics, emergent Alpha (A), Beta (B) and Delta (D) SARS-CoV-2 variants were assessed for thei... Read More about Emergent SARS-CoV-2 variants: comparative replication dynamics and high sensitivity to thapsigargin.

Significance of root hairs in developing stress-resilient plants for sustainable crop production (2021)
Journal Article
Kohli, P. S., Maurya, K., Thakur, J. K., Bhosale, R., & Giri, J. (2022). Significance of root hairs in developing stress-resilient plants for sustainable crop production. Plant, Cell and Environment, 45(3), 677-694. https://doi.org/10.1111/pce.14237

Root hairs represent a beneficial agronomic trait to potentially reduce fertilizer and irrigation inputs. Over the past decades, research in the plant model Arabidopsis thaliana has provided insights into root hair development, the underlying genetic... Read More about Significance of root hairs in developing stress-resilient plants for sustainable crop production.

A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation (2021)
Journal Article
Gibbs, J. A., Mcausland, L., Robles-Zazueta, C. A., Murchie, E. H., & Burgess, A. J. (2021). A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation. Frontiers in Plant Science, 12, Article 780180. https://doi.org/10.3389/fpls.2021.780180

Stomata are integral to plant performance, enabling the exchange of gases between the atmosphere and the plant. The anatomy of stomata influences conductance properties with the maximal conductance rate, gsmax, calculated from density and size. Howev... Read More about A Deep Learning Method for Fully Automatic Stomatal Morphometry and Maximal Conductance Estimation.

Temporal refinement of 3D CNN semantic segmentations on 4D time-series of undersampled tomograms using hidden Markov models (2021)
Journal Article
Bellos, D., Basham, M., Pridmore, T., & French, A. P. (2021). Temporal refinement of 3D CNN semantic segmentations on 4D time-series of undersampled tomograms using hidden Markov models. Scientific Reports, 11(1), Article 23279. https://doi.org/10.1038/s41598-021-02466-x

Recently, several convolutional neural networks have been proposed not only for 2D images, but also for 3D and 4D volume segmentation. Nevertheless, due to the large data size of the latter, acquiring a sufficient amount of training annotations is mu... Read More about Temporal refinement of 3D CNN semantic segmentations on 4D time-series of undersampled tomograms using hidden Markov models.

Phosphorylated B6 vitamer deficiency in SALT OVERLY SENSITIVE 4 mutants compromises shoot and root development (2021)
Journal Article
Gorelova, V., Colinas, M., Dell’Aglio, E., Flis, P., Salt, D. E., & Fitzpatrick, T. B. (2022). Phosphorylated B6 vitamer deficiency in SALT OVERLY SENSITIVE 4 mutants compromises shoot and root development. Plant Physiology, 188(1), 220-240. https://doi.org/10.1093/plphys/kiab475

Stunted growth in saline conditions is a signature phenotype of the Arabidopsis SALT OVERLY SENSITIVE mutants (sos1-5) affected in pathways regulating the salt stress response. One of the mutants isolated, sos4, encodes a kinase that phosphorylates p... Read More about Phosphorylated B6 vitamer deficiency in SALT OVERLY SENSITIVE 4 mutants compromises shoot and root development.

Future roots for future soils (2021)
Journal Article
Lynch, J. P., Mooney, S. J., Strock, C. F., & Schneider, H. M. (2022). Future roots for future soils. Plant, Cell and Environment, 45(3), 620-636. https://doi.org/10.1111/pce.14213

Mechanical impedance constrains root growth in most soils. Crop cultivation changed the impedance characteristics of native soils, through topsoil erosion, loss of organic matter, disruption of soil structure and loss of biopores. Increasing adoption... Read More about Future roots for future soils.

Dual expression and anatomy lines allow simultaneous visualization of gene expression and anatomy (2021)
Journal Article
Kümpers, B. M. C., Han, J., Vaughan-Hirsch, J., Redman, N., Ware, A., Atkinson, J. A., …Bishopp, A. (2022). Dual expression and anatomy lines allow simultaneous visualization of gene expression and anatomy. Plant Physiology, 188(1), 56-69. https://doi.org/10.1093/plphys/kiab503

Studying the developmental genetics of plant organs, requires following gene expression in specific tissues. To facilitate this, we have developed the Dual Expression Anatomy Lines (DEAL), which incorporate a red plasma membrane marker alongside a fl... Read More about Dual expression and anatomy lines allow simultaneous visualization of gene expression and anatomy.

Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis (2021)
Working Paper
Reyt, G., Ramakrishna, P., Salas-Gonzalez, I., Fujita, S., Love, A., Tiemessen, D., …Salt, D. E. Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis

Lignin is a complex polymer precisely deposited in the cell wall of specialised plant cells, where it provides essential cellular functions. Plants coordinate timing, location, abundance and composition of lignin deposition in response to endogenous... Read More about Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis.

Effect of AAV-mediated overexpression of ATF5 and downstream targets of an integrated stress response in murine skeletal muscle (2021)
Journal Article
Brearley-Sholto, M. C., Loczenski-Brown, D. M., Jones, S., Daniel, Z. C., Ebling, F. J., Parr, T., & Brameld, J. M. (2021). Effect of AAV-mediated overexpression of ATF5 and downstream targets of an integrated stress response in murine skeletal muscle. Scientific Reports, 11(1), 1-13. https://doi.org/10.1038/s41598-021-99432-4

We previously reported that growth promoter-induced skeletal muscle hypertrophy co-ordinately upregulated expression of genes associated with an integrated stress response (ISR), as well as potential ISR regulators. We therefore used Adeno-Associated... Read More about Effect of AAV-mediated overexpression of ATF5 and downstream targets of an integrated stress response in murine skeletal muscle.

Maternal one-carbon metabolism during the periconceptional period and human foetal brain growth: A systematic review (2021)
Journal Article
Rubini, E., Baijens, I. M., Horánszky, A., Schoenmakers, S., Sinclair, K. D., Zana, M., …Rousian, M. (2021). Maternal one-carbon metabolism during the periconceptional period and human foetal brain growth: A systematic review. Genes, 12(10), Article 1634. https://doi.org/10.3390/genes12101634

The maternal environment during the periconceptional period influences foetal growth and development, in part, via epigenetic mechanisms moderated by one-carbon metabolic pathways. During embryonic development, one-carbon metabolism is involved in br... Read More about Maternal one-carbon metabolism during the periconceptional period and human foetal brain growth: A systematic review.

Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation (2021)
Journal Article
George, P. B., Fidler, D. B., Van Nostrand, J. D., Atkinson, J. A., Mooney, S. J., Creer, S., …Jones, D. L. (2021). Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation. Frontiers in Microbiology, 12, 1-16. https://doi.org/10.3389/fmicb.2021.735022

Soil organic matter is composed of a variety of carbon (C) forms. However, not all forms are equally accessible to soil microorganisms. Deprivation of C inputs will cause changes in the physical and microbial community structures of soils; yet the tr... Read More about Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation.

Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles (2021)
Journal Article
Konečná, V., Bray, S., Vlček, J., Bohutínská, M., Požárová, D., Choudhury, R. R., …Kolář, F. (2021). Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nature Communications, 12(1), Article 4979. https://doi.org/10.1038/s41467-021-25256-5

Relative contributions of pre-existing vs de novo genomic variation to adaptation are poorly understood, especially in polyploid organisms. We assess this in high resolution using autotetraploid Arabidopsis arenosa, which repeatedly adapted to toxic... Read More about Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles.

Microbial Metal Resistance within Structured Environments Is Inversely Related to Environmental Pore Size (2021)
Journal Article
Harvey, H. J., Mitzakoff, A. M., Wildman, R. D., Mooney, S. J., & Avery, S. V. (2021). Microbial Metal Resistance within Structured Environments Is Inversely Related to Environmental Pore Size. Applied and Environmental Microbiology, 87(20), Article e01005-21. https://doi.org/10.1128/AEM.01005-21

The physical environments in which microorganisms naturally reside rarely have homogeneous structure, and changes in their porous architecture may have effects on microbial activities that are not typically captured in conventional laboratory studies... Read More about Microbial Metal Resistance within Structured Environments Is Inversely Related to Environmental Pore Size.