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Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis (2021)
Working Paper
Reyt, G., Ramakrishna, P., Salas-Gonzalez, I., Fujita, S., Love, A., Tiemessen, D., …Salt, D. E. Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis

Lignin is a complex polymer precisely deposited in the cell wall of specialised plant cells, where it provides essential cellular functions. Plants coordinate timing, location, abundance and composition of lignin deposition in response to endogenous... Read More about Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis.

Sodium hyperaccumulators in the Caryophyllales are characterized by both abnormally large shoot sodium concentrations and [Na]shoot/[Na]root quotients greater than unity (2021)
Journal Article
Neugebauer, K., Broadley, M. R., El-Serehy, H. A., George, T. S., Graham, N. S., Thompson, J. A., …White, P. J. (2022). Sodium hyperaccumulators in the Caryophyllales are characterized by both abnormally large shoot sodium concentrations and [Na]shoot/[Na]root quotients greater than unity. Annals of Botany, 129(1), 65-78. https://doi.org/10.1093/aob/mcab126

BACKGROUND AND AIMS: Some Caryophyllales species accumulate abnormally large shoot sodium (Na) concentrations in non-saline environments. It is not known whether this is a consequence of altered Na partitioning between roots and shoots. This paper te... Read More about Sodium hyperaccumulators in the Caryophyllales are characterized by both abnormally large shoot sodium concentrations and [Na]shoot/[Na]root quotients greater than unity.

Physiological screening for drought tolerance traits in vegetable amaranth (Amaranthus tricolor) germplasm (2021)
Journal Article
Jamalluddin, N., Massawe, F. J., Mayes, S., Ho, W. K., Singh, A., & Symonds, R. C. (2021). Physiological screening for drought tolerance traits in vegetable amaranth (Amaranthus tricolor) germplasm. Agriculture, 11(10), Article 994. https://doi.org/10.3390/agriculture11100994

Amaranth (Amaranthus tricolor), an underutilized climate smart crop, is highly nutritious and possesses diverse drought tolerance traits, making it an ideal crop to thrive in a rapidly changing climate. Despite considerable studies on the growth and... Read More about Physiological screening for drought tolerance traits in vegetable amaranth (Amaranthus tricolor) germplasm.

Yield Losses and Control by Sedaxane and Fludioxonil of Soilborne Rhizoctonia, Microdochium, and Fusarium Species in Winter Wheat (2021)
Journal Article
Brown, M., Jayaweera, D. P., Hunt, A., Woodhall, J. W., & Ray, R. V. (2021). Yield Losses and Control by Sedaxane and Fludioxonil of Soilborne Rhizoctonia, Microdochium, and Fusarium Species in Winter Wheat. Plant Disease, 105(9), 2521–2530. https://doi.org/10.1094/PDIS-11-20-2401-RE

Soilborne Rhizoctonia, Microdochium, and Fusarium species are major causal agents of seedling and stem-base diseases of wheat. Currently, seed treatments are considered the most effective solution for their control. Rhizoctonia solani anastomosis gro... Read More about Yield Losses and Control by Sedaxane and Fludioxonil of Soilborne Rhizoctonia, Microdochium, and Fusarium Species in Winter Wheat.

Good soil management can reduce dietary zinc deficiency in Zimbabwe (2021)
Journal Article
Manzeke-Kangara, M. G., Joy, E. J. M., Mtambanengwe, F., Chopera, P., Watts, M. J., Broadley, M. R., & Mapfumo, P. (2021). Good soil management can reduce dietary zinc deficiency in Zimbabwe. CABI Agriculture and Bioscience, 2(1), Article 36. https://doi.org/10.1186/s43170-021-00057-4

Background Dietary zinc (Zn) deficiency is widespread in sub-Saharan Africa (SSA) with adverse impacts on human health. Agronomic biofortification with Zn fertilizers and improved soil fertility management, using mineral and organic nutrient resourc... Read More about Good soil management can reduce dietary zinc deficiency in Zimbabwe.

The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets (2021)
Journal Article
Borna, R. S., Murchie, E. H., Pyke, K. A., Roberts, J. A., & Gonzalez-Carranza, Z. H. (2022). The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets. Plant Biotechnology Journal, 20(2), 297-309. https://doi.org/10.1111/pbi.13710

ERECTA PANICLE 3 (EP3) and ORYZA SATIVA F-BOX KELCH 1 (OsFBK1) proteins share 57% and 54% sequence identity with the Arabidopsis F-box protein HAWAIIAN SKIRT (HWS). Previously we showed that EP3 is a functional orthologue of HWS. Here we demonstrate... Read More about The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.

Genotypic and ecological variability of zinc content in the grain of spring bread wheat varieties in the international nursery KASIB (2021)
Journal Article
Shamanin, V. P., Flis, P., Savin, T. V., Shepelev, S. S., Kuzmin, O. G., Chursin, A. S., …Morgounov, A. I. (2021). Genotypic and ecological variability of zinc content in the grain of spring bread wheat varieties in the international nursery KASIB. Russian Journal of Genetics: Applied Research / Vavilovskii Zhurnal Genetiki I Selektsii i Ekologicheskaya genetika, 25(5), 543-551. https://doi.org/10.18699/VJ21.061

Spring bread wheat is the staple crop in Western Siberia and Kazakhstan, a significant portion of which goes for export. Wheat breeding with a high level of zinc in wheat grain is the most cost-effective and environmentally friendly way to address zi... Read More about Genotypic and ecological variability of zinc content in the grain of spring bread wheat varieties in the international nursery KASIB.

CG7379 and ING1 suppress cancer cell invasion by maintaining cell–cell junction integrity (2021)
Journal Article
Rusu, A. D., Cornhill, Z. E., Coutiño, B. C., Uribe, M. C., Lourdusamy, A., Markus, Z., …Georgiou, M. (2021). CG7379 and ING1 suppress cancer cell invasion by maintaining cell–cell junction integrity. Open Biology, 11(9), Article 210077. https://doi.org/10.1098/rsob.210077

Approximately 90% of cancer-related deaths can be attributed to a tumour's ability to spread. We have identified CG7379, the fly orthologue of human ING1, as a potent invasion suppressor. ING1 is a type II tumour suppressor with well-established role... Read More about CG7379 and ING1 suppress cancer cell invasion by maintaining cell–cell junction integrity.

Assessing land suitability for rainfed paddy rice production in Zambia (2021)
Journal Article
Makungwe, M., Chabala, L. M., Van Dijk, M., Chishala, B. H., & Lark, R. M. (2021). Assessing land suitability for rainfed paddy rice production in Zambia. Geoderma Regional, 27, Article e00438. https://doi.org/10.1016/j.geodrs.2021.e00438

Rice is one of the staple food crops and is a profitable smallholder cash crop in Zambia. It has the potential to contribute significantly to increased incomes and employment among rural producers. However, rice is the only staple crop in the country... Read More about Assessing land suitability for rainfed paddy rice production in Zambia.

The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy (2021)
Journal Article
Burgess, A. J., Durand, M., Retkute, R., Gibbs, J. A., Robson, T. M., & Murchie, E. H. (2021). The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy. Plant, Cell and Environment, 44(11), 3524-3537. https://doi.org/10.1111/pce.14168

Under field conditions, plants are subject to wind-induced movement which creates fluctuations of light intensity and spectral quality reaching the leaves, defined here as windflecks. Within this study, irradiance within two contrasting wheat (Tritic... Read More about The effect of canopy architecture on the patterning of “windflecks” within a wheat canopy.

Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles (2021)
Journal Article
Konečná, V., Bray, S., Vlček, J., Bohutínská, M., Požárová, D., Choudhury, R. R., …Kolář, F. (2021). Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nature Communications, 12(1), Article 4979. https://doi.org/10.1038/s41467-021-25256-5

Relative contributions of pre-existing vs de novo genomic variation to adaptation are poorly understood, especially in polyploid organisms. We assess this in high resolution using autotetraploid Arabidopsis arenosa, which repeatedly adapted to toxic... Read More about Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles.

Non-invasive hydrodynamic imaging in plant roots at cellular resolution (2021)
Journal Article
Pascut, F. C., Couvreur, V., Dietrich, D., Leftley, N., Reyt, G., Boursiac, Y., …Webb, K. F. (2021). Non-invasive hydrodynamic imaging in plant roots at cellular resolution. Nature Communications, 12(1), 1-7. https://doi.org/10.1038/s41467-021-24913-z

A key impediment to studying water-related mechanisms in plants is the inability to non-invasively image water fluxes in cells at high temporal and spatial resolution. Here, we report that Raman microspectroscopy, complemented by hydrodynamic modelli... Read More about Non-invasive hydrodynamic imaging in plant roots at cellular resolution.

Target Gene Identification and sgRNA Design for Waterlogging Tolerance in Foxtail Millet via CRISPR-Based Transcriptional Activation (2021)
Journal Article
Nor Akmar Abdullah, S., Abdullah, A., & Mayes, S. (2021). Target Gene Identification and sgRNA Design for Waterlogging Tolerance in Foxtail Millet via CRISPR-Based Transcriptional Activation. Current Chinese Science, 1(5), 523-533. https://doi.org/10.2174/2210298101666210709104258

Background: CRISPR activation (CRISPRa) uses non-functional Cas9 endonuclease (dCas9) but retains the genome targeting ability through its single guide RNAs (sgRNAs). CRISPRa is widely utilised as a gene activation system exploiting its ability in r... Read More about Target Gene Identification and sgRNA Design for Waterlogging Tolerance in Foxtail Millet via CRISPR-Based Transcriptional Activation.

The effect of soil properties on zinc lability and solubility in soils of Ethiopia - an isotopic dilution study (2021)
Journal Article
Mossa, A. W., Gashu, D., Broadley, M. R., Dunham, S. J., McGrath, S. P., Bailey, E. H., & Young, S. D. (2021). The effect of soil properties on zinc lability and solubility in soils of Ethiopia - an isotopic dilution study. SOIL, 7(1), 255-268. https://doi.org/10.5194/soil-7-255-2021

Zinc (Zn) deficiency is a widespread nutritional problem in human populations, especially in sub-Saharan Africa (SSA). The Zn concentration of crops consumed depends in part on the Zn status of the soil. Improved understanding of factors controlling... Read More about The effect of soil properties on zinc lability and solubility in soils of Ethiopia - an isotopic dilution study.

OsJAZ11 regulates phosphate starvation responses in rice (2021)
Journal Article
Pandey, B. K., Verma, L., Prusty, A., Singh, A. P., Bennett, M. J., Tyagi, A. K., …Mehra, P. (2021). OsJAZ11 regulates phosphate starvation responses in rice. Planta, 254(1), 1-16. https://doi.org/10.1007/s00425-021-03657-6

Main conclusion: OsJAZ11 regulates phosphate homeostasis by suppressing jasmonic acid signaling and biosynthesis in rice roots. Abstract: Jasmonic Acid (JA) is a key plant signaling molecule which negatively regulates growth processes including root... Read More about OsJAZ11 regulates phosphate starvation responses in rice.

Identifying quantitative trait loci for lodging-associated traits in the wheat doubled-haploid population Avalon × Cadenza (2021)
Journal Article
Piñera-Chavez, F. J., Berry, P. M., Foulkes, M. J., Sukumaran, S., & Reynolds, M. P. (2021). Identifying quantitative trait loci for lodging-associated traits in the wheat doubled-haploid population Avalon × Cadenza. Crop Science, 61(4), 2371-2386. https://doi.org/10.1002/csc2.20485

Lodging affects grain quality and grain yield in wheat (Triticum aestivum L.) and is difficult to breed for because its sporadic incidence and laborious protocols to measure lodging traits. Thus, developing molecular markers for these traits can incr... Read More about Identifying quantitative trait loci for lodging-associated traits in the wheat doubled-haploid population Avalon × Cadenza.

Mapping the interaction between eukaryotic initiation factor 4A (eIF4A) and the inhibitor hippuristanol using carbene footprinting and mass spectrometry (2021)
Journal Article
Lloyd, J. R., Hogan, A., Paschalis, V., Bellamy-Carter, J., Bottley, A., Seymour, G. B., …Oldham, N. J. (2021). Mapping the interaction between eukaryotic initiation factor 4A (eIF4A) and the inhibitor hippuristanol using carbene footprinting and mass spectrometry. Proteomics, 21(21-22), Article 2000288. https://doi.org/10.1002/pmic.202000288

Protein-ligand interactions are central to protein activity and cell functionality. Improved knowledge of these relationships greatly benefits our understanding of key biological processes and aids in rational drug design towards the treatment of cli... Read More about Mapping the interaction between eukaryotic initiation factor 4A (eIF4A) and the inhibitor hippuristanol using carbene footprinting and mass spectrometry.

Ten challenges for the future of pedometrics (2021)
Journal Article
Wadoux, A. M., Heuvelink, G. B., Lark, R. M., Lagacherie, P., Bouma, J., Mulder, V. L., …McBratney, A. B. (2021). Ten challenges for the future of pedometrics. Geoderma, 401, Article 115155. https://doi.org/10.1016/j.geoderma.2021.115155

Pedometrics, the application of mathematical and statistical methods to the study of the distribution and genesis of soils, has broadened its scope over the past two decades. The primary focus of pedometricians has traditionally been on spatial and s... Read More about Ten challenges for the future of pedometrics.

A comparison between three legacy soil maps of Zambia at national scale: The spatial patterns of legend units and their relation to soil properties (2021)
Journal Article
Mukumbuta, I., Chabala, L. M., Sichinga, S., Miti, C., & Lark, R. M. (2021). A comparison between three legacy soil maps of Zambia at national scale: The spatial patterns of legend units and their relation to soil properties. Geoderma, 402, Article 115193. https://doi.org/10.1016/j.geoderma.2021.115193

We examined three soil maps of Zambia, two published at scales of 1:1 million – the Exploratory Soil Map of Zambia (ESMZ) and the Vegetation–Soil Map produced by Trapnell and colleagues in 1947 – and one at 1:3 million, the Soil Atlas of Africa (SAA)... Read More about A comparison between three legacy soil maps of Zambia at national scale: The spatial patterns of legend units and their relation to soil properties.