Skip to main content

Research Repository

Advanced Search

All Outputs (9)

Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray (2012)
Journal Article
Fabi, J. P., Seymour, G. B., Graham, N. S., Broadley, M. R., May, S., Lajolo, F. M., …Oliveira do Nascimento, J. R. (in press). Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray. BMC Plant Biology, 12, Article 242. https://doi.org/10.1186/1471-2229-12-242

Background Papaya (Carica papaya L.) is a commercially important crop that produces climacteric fruits with a soft and sweet pulp that contain a wide range of health promoting phytochemicals. Despite its importance, little is known about transcrip... Read More about Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray.

Ethnobiology: The missing link in ecology and evolution (2012)
Journal Article
Saslis-Lagoudakis, C. H., & Clarke, A. C. (2013). Ethnobiology: The missing link in ecology and evolution. Trends in Ecology and Evolution, 28(2), 67-68. https://doi.org/10.1016/j.tree.2012.10.017

Evolutionary biologists and ecologists increasingly appreciate the value of local knowledge of human communities for research into the past, present, and future of biodiversity. However, there are often significant problems accessing and interpreting... Read More about Ethnobiology: The missing link in ecology and evolution.

Adaptation for protein synthesis efficiency in a naturally occurring self-regulating operon (2012)
Journal Article
Herman, D., Thomas, C. M., & Steke, D. J. (2012). Adaptation for protein synthesis efficiency in a naturally occurring self-regulating operon. PLoS ONE, 7(11), Article e49678. https://doi.org/10.1371/journal.pone.0049678

The korAB operon in RK2 plasmids is a beautiful natural example of a negatively and cooperatively self-regulating operon. It has been particularly well characterized both experimentally and with mathematical models. We have carried out a detailed inv... Read More about Adaptation for protein synthesis efficiency in a naturally occurring self-regulating operon.

Modulation of pluripotency in the porcine embryo and iPS Cells (2012)
Journal Article
Rodríguez, A., Allegrucci, C., & Alberio, R. (2012). Modulation of pluripotency in the porcine embryo and iPS Cells. PLoS ONE, 7(11), Article 12. https://doi.org/10.1371/journal.pone.0049079

The establishment of the pluripotent ICM during early mammalian development is characterized by the differential expression of the transcription factors NANOG and GATA4/6, indicative of the epiblast and hypoblast, respectively. Differences in the mec... Read More about Modulation of pluripotency in the porcine embryo and iPS Cells.

Multiscale modelling of auxin transport in the plant-root elongation zone (2012)
Journal Article
Band, L. R., & King, J. R. (2012). Multiscale modelling of auxin transport in the plant-root elongation zone. Journal of Mathematical Biology, 65(4), https://doi.org/10.1007/s00285-011-0472-y

In the root elongation zone of a plant, the hormone auxin moves in a polar manner due to active transport facilitated by spatially distributed influx and efflux carriers present on the cell membranes. To understand how the cell-scale active transport... Read More about Multiscale modelling of auxin transport in the plant-root elongation zone.

Carbohydrate binding and gene expression by in vitro and in vivo propagated Campylobacter jejuni after Immunomagnetic Separation (2012)
Journal Article
King, R. M., Day, C. J., Hartley-Tassell, L. E., Connerton, I. F., Tiralongo, J., Mcguckin, M. A., & Korolik, V. (2012). Carbohydrate binding and gene expression by in vitro and in vivo propagated Campylobacter jejuni after Immunomagnetic Separation. Journal of Basic Microbiology, 53(3), 240-250. https://doi.org/10.1002/jobm.201100466

Campylobacter jejuni is an important human food-borne intestinal pathogen, however relatively little is known about its mechanisms of pathogenesis or pathogen-host interactions. To monitor changes in gene expression and glycan binding of C. jejuni wi... Read More about Carbohydrate binding and gene expression by in vitro and in vivo propagated Campylobacter jejuni after Immunomagnetic Separation.

Adenosine methylation in Arabidopsis mRNA is associated with the 3? end and reduced levels cause developmental defects (2012)
Journal Article
Bodi, Z., Zhong, S., Mehra, S., Song, J., Graham, N., Li, H., …Fray, R. G. (2012). Adenosine methylation in Arabidopsis mRNA is associated with the 3′ end and reduced levels cause developmental defects. Frontiers in Plant Science, 3(48), Article 48. https://doi.org/10.3389/fpls.2012.00048

We previously showed that the N6-methyladenosine (m6A) mRNA methylase is essential during Arabidopsis thaliana embryonic development. We also demonstrated that this modification is present at varying levels in all mature tissues. However, the require... Read More about Adenosine methylation in Arabidopsis mRNA is associated with the 3? end and reduced levels cause developmental defects.

Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns (2012)
Journal Article
Fu, A. Q., Genereux, D. P., Stöger, R., Burden, A. F., Laird, C. D., & Stephens, M. (2012). Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns. PLoS ONE, 7(3), Article e32225. https://doi.org/10.1371/journal.pone.0032225

DNA methyltransferases establish methylation patterns in cells and transmit these patterns over cell generations, thereby influencing each cell's epigenetic states. Three primary DNA methyltransferases have been identified in mammals: DNMT1, DNMT3A a... Read More about Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns.