Research Repository

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Gsmodutils: A python based framework for test-driven genome scale metabolic model development (2019)
Journal Article
Gilbert, J., Pearcy, N., Norman, R., Millat, T., Winzer, K., King, J., …Twycross, J. (2019). Gsmodutils: A python based framework for test-driven genome scale metabolic model development. Bioinformatics, doi:10.1093/bioinformatics/btz088

Motivation Genome scale metabolic models (GSMMs) are increasingly important for systems biology and metabolic engineering research as they are capable of simulating complex steady-state behaviour. Constraints based models of this form can include th... Read More

From clusters to queries: exploiting uncertainty in the modularity landscape of complex networks (2018)
Conference Proceeding
Gilbert, J. P., & Twycross, J. (2018). From clusters to queries: exploiting uncertainty in the modularity landscape of complex networks

Uncovering latent community structure in complex networks is a field that has received an enormous amount of attention. Unfortunately, whilst potentially very powerful, unsupervised methods for uncovering labels based on topology alone has been shown... Read More