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High-resolution self-gated dynamic abdominal MRI using manifold alignment

Chen, Xin; Usman, Muhammad; Baumgartner, Christian F.; Balfour, Daniel R.; Marsden, Paul K.; Reader, Andrew J.; Prieto, Claudia; King, Andrew P.

Authors

XIN CHEN XIN.CHEN@NOTTINGHAM.AC.UK
Associate Professor

Muhammad Usman

Christian F. Baumgartner

Daniel R. Balfour

Paul K. Marsden

Andrew J. Reader

Claudia Prieto

Andrew P. King



Abstract

We present a novel retrospective self-gating method based on manifold alignment (MA), which enables reconstruction of free-breathing, high spatial and temporal resolution abdominal MRI sequences. Based on a radial golden-angle (RGA) acquisition trajectory, our method enables a multi-dimensional self-gating signal to be extracted from the k-space data for more accurate motion representation. The k-space radial profiles are evenly divided into a number of overlapping groups based on their radial angles. MA is then used to simultaneously learn and align the low dimensional manifolds of all groups, and embed them into a common manifold. In the manifold, k-space profiles that represent similar respiratory positions are close to each other. Image reconstruction is performed by combining radial profiles with evenly distributed angles that are close in the manifold. Our method was evaluated on both 2D and 3D synthetic and in vivo datasets. On the synthetic datasets, our method achieved high correlation with the ground truth in terms of image intensity and virtual navigator values. Using the in vivo data, compared to a state-of-the-art approach based on centre of k-space gating, our method was able to make use of much richer profile data for self-gating, resulting in statistically significantly better quantitative measurements in terms of organ sharpness and image gradient entropy.

Citation

Chen, X., Usman, M., Baumgartner, C. F., Balfour, D. R., Marsden, P. K., Reader, A. J., …King, A. P. (2017). High-resolution self-gated dynamic abdominal MRI using manifold alignment. IEEE Transactions on Medical Imaging, 36(4), https://doi.org/10.1109/TMI.2016.2636449

Journal Article Type Article
Acceptance Date Dec 1, 2016
Publication Date Jan 20, 2017
Deposit Date Apr 21, 2017
Publicly Available Date Mar 29, 2024
Journal IEEE Transactions on Medical Imaging
Print ISSN 0278-0062
Electronic ISSN 1558-254X
Publisher Institute of Electrical and Electronics Engineers
Peer Reviewed Peer Reviewed
Volume 36
Issue 4
DOI https://doi.org/10.1109/TMI.2016.2636449
Keywords Magnetic resonance imaging (MRI), Reconstruction, Manifold alignment (MA), MRI self-gating, Respiratory motion
Public URL https://nottingham-repository.worktribe.com/output/839653
Publisher URL http://ieeexplore.ieee.org/document/7828136/

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