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Unravelling Strain-Specific Modifications of Toxoplasma gondii tRNA and sncRNA Using LC-MS/MS

Wang, Wei; Yang, Yi; Guo, Huanping; Li, Ming Han; Chen, Xiao Qing; Wei, Xin Yu; Chen, Yu; Elsheikha, Hany M.; Zhang, Xiao Xuan

Authors

Wei Wang

Yi Yang

Huanping Guo

Ming Han Li

Xiao Qing Chen

Xin Yu Wei

Yu Chen

Xiao Xuan Zhang



Contributors

Abstract

Many RNA modifications have been detected in rRNA, tRNA and small noncoding RNA (sncRNA) as well as in low-abundance RNA species such mRNA. Although RNA modifications play roles in many cellular and biological processes in various domains of life, knowledge about the diversity and role of RNA modifications in Toxoplasma gondii is limited. In this study, RNA modifications in three T. gondii strains (RH type I, PRU type II, and VEG type III) with distinct virulence abilities were determined by liquid chromatography-tandem mass spectrometry. We compared the levels of modifications of four nucleotides in tRNA and sncRNA, characterized RNA modification patterns of different T. gondii strains, and determined the diversity of RNA modifications. We detected and quantified 22 modified nucleosides in both tRNA and sncRNA. Significant differences in the diversity of the modified nucleosides were found between the three T. gondii strains. RNA modifications were correlated with the expression of many T. gondii virulence proteins. Some of the identified modifications (e.g., 2'-O-methylinosine, pseudouridine) play a role in mediating the host-parasite interaction. These results provide novel insight into the global modifications in tRNA and sncRNA, and the diversity of RNA modifications between T. gondii strains with different virulence backgrounds. IMPORTANCE Although RNA modifications play roles in many cellular and developmental processes in various domains of life, knowledge about the patterns and functions of RNA modifications in T. gondii is limited. Here, a quantitative liquid chromatography-tandem mass spectrometry (LC-MS/MS) approach was used to study global RNA modifications in T. gondii strains of distinct virulence backgrounds. We quantified 22 modified nucleosides in both tRNA and sncRNA. Significant T. gondii strain-specific differences in RNA modifications were detected. More tRNA modifications correlated with T. gondii virulence proteins than sncRNA modifications. RNA modifications were significantly correlated with virulence proteins. Our data provide the first comprehensive profiling of the modifications tRNA and sncRNA in T. gondii, expanding the diversity of RNA modifications in this parasite and suggesting new regulators for modulating its virulence.

Citation

Wang, W., Yang, Y., Guo, H., Li, M. H., Chen, X. Q., Wei, X. Y., …Zhang, X. X. (2023). Unravelling Strain-Specific Modifications of Toxoplasma gondii tRNA and sncRNA Using LC-MS/MS. Microbiology Spectrum, 11(3), Article e0356422. https://doi.org/10.1128/spectrum.03564-22

Journal Article Type Article
Acceptance Date Mar 21, 2023
Online Publication Date Apr 10, 2023
Publication Date Apr 10, 2023
Deposit Date Apr 10, 2023
Publicly Available Date Mar 29, 2024
Journal Microbiology Spectrum
Electronic ISSN 2165-0497
Peer Reviewed Peer Reviewed
Volume 11
Issue 3
Article Number e0356422
DOI https://doi.org/10.1128/spectrum.03564-22
Keywords Infectious Diseases; Cell Biology; Microbiology (medical); Genetics; General Immunology and Microbiology; Ecology; Physiology
Public URL https://nottingham-repository.worktribe.com/output/19456357
Publisher URL https://journals.asm.org/doi/10.1128/spectrum.03564-22

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