Outputs (27)

The evolution of the duckweed ionome mirrors losses in structural complexity (2024)
Journal Article
Smith, K. E., Zhou, M., Flis, P., Jones, D., Bishopp, A., & Yant, L. (in press). The evolution of the duckweed ionome mirrors losses in structural complexity. Annals of Botany, Article mcae012. https://doi.org/10.1093/aob/mcae012

Background and Aims The duckweeds (Lemnaceae) consist of 36 species exhibiting impressive phenotypic variation, including the progressive evolutionary loss of a fundamental plant organ, the root. Loss of roots and reduction of vascular tissues in re... Read More about The evolution of the duckweed ionome mirrors losses in structural complexity.

Combined genomics to discover genes associated with tolerance to soil carbonate (2023)
Journal Article
Busoms, S., Pérez‐Martín, L., Terés, J., Huang, X., Yant, L., Tolrà, R., …Poschenrieder, C. (2023). Combined genomics to discover genes associated with tolerance to soil carbonate. Plant, Cell and Environment, 46(12), 3986-3998. https://doi.org/10.1111/pce.14691

Carbonate‐rich soils limit plant performance and crop production. Previously, local adaptation to carbonated soils was detected in wild Arabidopsis thaliana accessions, allowing the selection of two demes with contrasting phenotypes: A1 (carbonate to... Read More about Combined genomics to discover genes associated with tolerance to soil carbonate.

Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters (2023)
Journal Article
Ware, A., Jones, D. H., Flis, P., Chrysanthou, E., Smith, K. E., Kümpers, B. M., …Bishopp, A. (2023). Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters. Current Biology, 33(9), 1795-1802. https://doi.org/10.1016/j.cub.2023.03.025

Organ loss occurs frequently during plant and animal evolution. Sometimes, non-functional organs are retained through evolution. Vestigial organs are defined as genetically determined structures that have lost their ancestral (or salient) function. D... Read More about Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters.

Chasing the mechanisms of ecologically adaptive salinity tolerance (2023)
Journal Article
Busoms, S., Fischer, S., & Yant, L. (2023). Chasing the mechanisms of ecologically adaptive salinity tolerance. Plant Communications, 4(6), Article 100571. https://doi.org/10.1016/j.xplc.2023.100571

Plants adapted to challenging environments offer fascinating models of evolutionary change. Importantly, they also give information to meet our pressing need to develop resilient, low-input crops. With mounting environmental fluctuation—including tem... Read More about Chasing the mechanisms of ecologically adaptive salinity tolerance.

Evolutionary footprints of a cold relic in a rapidly warming world (2021)
Journal Article
Wolf, E., Gaquerel, E., Scharmann, M., Yant, L., & Koch, M. A. (2021). Evolutionary footprints of a cold relic in a rapidly warming world. eLife, 10, Article e71572. https://doi.org/10.7554/elife.71572

With accelerating global warming, understanding the evolutionary dynamics of plant adaptation to environmental change is increasingly urgent. Here we reveal the enigmatic history of the genus Cochlearia (Brassicaceae), a Pleistocene relic that origin... Read More about Evolutionary footprints of a cold relic in a rapidly warming world.

Transposable element annotation in non‐model species: The benefits of species‐specific repeat libraries using semi‐automated EDTA and DeepTE de novo pipelines (2021)
Journal Article
Bell, E. A., Butler, C. L., Oliveira, C., Marburger, S., Yant, L., & Taylor, M. I. (2022). Transposable element annotation in non‐model species: The benefits of species‐specific repeat libraries using semi‐automated EDTA and DeepTE de novo pipelines. Molecular Ecology Resources, 22(2), 823-833. https://doi.org/10.1111/1755-0998.13489

Transposable elements (TEs) are significant genomic components which can be detected either through sequence homology against existing databases or de novo, with the latter potentially reducing the risk of underestimating TE abundance. Here, we descr... Read More about Transposable element annotation in non‐model species: The benefits of species‐specific repeat libraries using semi‐automated EDTA and DeepTE de novo pipelines.

Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles (2021)
Journal Article
Konečná, V., Bray, S., Vlček, J., Bohutínská, M., Požárová, D., Choudhury, R. R., …Kolář, F. (2021). Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nature Communications, 12(1), Article 4979. https://doi.org/10.1038/s41467-021-25256-5

Relative contributions of pre-existing vs de novo genomic variation to adaptation are poorly understood, especially in polyploid organisms. We assess this in high resolution using autotetraploid Arabidopsis arenosa, which repeatedly adapted to toxic... Read More about Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles.

Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe (2021)
Journal Article
Su, W., Jing, Y., Lin, S., Yue, Z., Yang, X., Xu, J., …Liu, Z. (2021). Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe. Proceedings of the National Academy of Sciences, 118(20), 1-11. https://doi.org/10.1073/pnas.2101767118

Whole-genome duplication (WGD) plays important roles in plant evolution and function, yet little is known about how WGD underlies metabolic diversification of natural products that bear significant medicinal properties, especially in nonmodel trees.... Read More about Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe.

Novelty and Convergence in Adaptation to Whole Genome Duplication (2021)
Journal Article
Bohutínská, M., Alston, M., Monnahan, P., Mandáková, T., Bray, S., Paajanen, P., …Yant, L. (2021). Novelty and Convergence in Adaptation to Whole Genome Duplication. Molecular Biology and Evolution, 38(9), 3910-3924. https://doi.org/10.1093/molbev/msab096

Whole genome duplication (WGD) can promote adaptation but is disruptive to conserved processes, especially meiosis. Studies in Arabidopsis arenosa revealed a coordinated evolutionary response to WGD involving interacting proteins controlling meiotic... Read More about Novelty and Convergence in Adaptation to Whole Genome Duplication.

Population genomic and historical analysis suggests a global invasion by bridgehead processes in Mimulus guttatus (2021)
Journal Article
Vallejo-Marín, M., Friedman, J., Twyford, A. D., Lepais, O., Ickert-Bond, S. M., Streisfeld, M. A., …Puzey, J. R. (2021). Population genomic and historical analysis suggests a global invasion by bridgehead processes in Mimulus guttatus. Communications Biology, 4(1), https://doi.org/10.1038/s42003-021-01795-x

© 2021, The Author(s). Imperfect historical records and complex demographic histories present challenges for reconstructing the history of biological invasions. Here, we combine historical records, extensive worldwide and genome-wide sampling, and de... Read More about Population genomic and historical analysis suggests a global invasion by bridgehead processes in Mimulus guttatus.